| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0220 |
|---|
| Symbol | |
|---|
| ID | 5660620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 233478 |
|---|
| End bp | 233945 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641234741 |
|---|
| Product | cytochrome C biogenesis protein |
|---|
| Protein accession | YP_001500083 |
|---|
| Protein GI | 157960049 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3088] Uncharacterized protein involved in biosynthesis of c-type cytochromes |
|---|
| TIGRFAM ID | [TIGR03147] cytochrome c nitrite reductase, accessory protein NrfF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00000296906 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGGGT TATCGGCTCT AGTACTTCTA GTGAGCATGG TAAGTATTGT TAATGCTACG
CCGGTAGACA CTTATGAATT TAAGTCCGTT GATAATCAAA AGCGCGCATT AAGTCTAGCT
CACTCTTTAC GTTGCCCGCA GTGTCAGAAC CAGAACCTAA TCGACTCTAA CTCTCCAGTT
GCTCAAGACC TTCGTCTAGA AGTATACCAG ATGGTTGATG AAGGTAAGGG GGATGATGAA
ATCGTTGAAT TCATGACGAG TCGTTACGGT GAGTTCGTAC TATATAAGCC ACGCATGGAA
GCTAAAACTT ACGCACTTTG GTTAGGCCCT GTAGCTCTAC TGTTATTTGG TGGTTTGATA
GGTTTCTTTT TCATTCGTAA ACAGCGTATA GCAGAGGCGA CTAACCAAGA GCTATCTACT
GAAGAGCAAG AAGAACTCGA TCGTCTATTA AAGAGAGACG CTAAATGA
|
|---|
| Protein sequence | MKGLSALVLL VSMVSIVNAT PVDTYEFKSV DNQKRALSLA HSLRCPQCQN QNLIDSNSPV
AQDLRLEVYQ MVDEGKGDDE IVEFMTSRYG EFVLYKPRME AKTYALWLGP VALLLFGGLI
GFFFIRKQRI AEATNQELST EEQEELDRLL KRDAK
|
|---|
| |