Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0185 |
Symbol | rplD |
ID | 5660586 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 211418 |
End bp | 212023 |
Gene Length | 606 bp |
Protein Length | 201 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641234707 |
Product | 50S ribosomal protein L4 |
Protein accession | YP_001500049 |
Protein GI | 157960015 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0088] Ribosomal protein L4 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0000178875 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAATTGG TATTGAAAGA CGCACAGAGT GCTCTTGAAG TTTCCGAAGC TACCTTTGGC CGTGACTTTA ATGAAGCACT GGTTCATCAG GTAGTTGTAG CTTACGCTGC AAACGCGCGT CAGGGCACTC GTGCTCAAAA GACTCGCGCA GAAGTAACTG GCTCAGGCAA GAAGCCATGG CGCCAAAAAG GTACTGGCCG TGCACGTGCT GGTACTGTTA AAGGCCCAAT CTGGCGTGGC GGTGGCGTAA CATTCGCTGC TAAAACACAA GATCACAGCC AAAAAGTTAA CAAAAAGATG TACCGCGGAG CGCTGAAGAG CATTTTCTCT GAATTGGTAC GTCAAGACCG TCTTATCGTA GTTGAGTCGT TCGGTGTTGA AGCTCCTAAA ACTAAAGAGC TGAAAGCTAA ACTAAACGAA ATGCAACTTG AAGATGTGTT GATTGTTACT CCAGAAGTTG ACGAGAACTT GTTCTTAGCT GCTCGTAACC TTTACAAAGT TGACGTACGT GATGTTGCTG GTATTGATCC AGTTAGCCTT ATCGCATTCA ACAAGGTACT AGTTACTGCT GAAGCTATTA AGCAAATCGA GGAGATGCTG GGATGA
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Protein sequence | MELVLKDAQS ALEVSEATFG RDFNEALVHQ VVVAYAANAR QGTRAQKTRA EVTGSGKKPW RQKGTGRARA GTVKGPIWRG GGVTFAAKTQ DHSQKVNKKM YRGALKSIFS ELVRQDRLIV VESFGVEAPK TKELKAKLNE MQLEDVLIVT PEVDENLFLA ARNLYKVDVR DVAGIDPVSL IAFNKVLVTA EAIKQIEEML G
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