| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0178 |
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| Symbol | |
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| ID | 5660579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 201292 |
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| End bp | 205506 |
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| Gene Length | 4215 bp |
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| Protein Length | 1404 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641234700 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001500042 |
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| Protein GI | 157960008 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.273104 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGATT TATTAAAGTT TCTGAAACAG CAAAGCAAGA CTGAAGAATT TGAAGGTATT
AAGATTGGCC TAGCGTCGCC AGACTTAATC CGTTCTTGGT CTTTTGGTGA AGTTAAGAAG
CCAGAAACCA TTAACTACCG TACATTTAAG CCTGAGCGTG AAGGTTTATT CTGTGCGCGT
ATTTTTGGTC CAGTAAAAGA TTATGAATGT TTATGCGGTA AGTATAAGCG TCTTAAGCAC
CGTGGTGTGA TCTGTGAAAA GTGTGGCGTT GAAGTTACAC AGACTAAAGT ACGTCGTGAG
CGTATGGGTC ACATCGATCT TGCTAGCCCA GTTGCACACA TTTGGTTCTT GAAGTCACTT
CCGTCTCGTA TCGGTTTGAT GCTAGACATG ACTCTACGTG ATATCGAACG TGTACTTTAC
TTCGAATCAT TCGTAGTAAT CGAGCCTGGC ATGACCAGTC TTGAACGCGG TCAAATGCTA
ACAGAAGAAA ACTATCTGGA TGCATTGGAA GAGTACGGTG ATGAATTCGA CGCTAAGATG
GGTGCTGAAG CAGTTCTAGA ATTGCTACGT GCTATCGAGC TTGAGAAAGA AATTGAGATG
ATGCGCGAAG AACTGCCATC TATCAATTCT GAAACTCGTC GCAAGAAGGT CACTAAGCGT
CTTAAGCTTA TTGAGGCATT CTTCACTTCA GGTAACAAGC CTGAGTGGAT GATCCTTAAA
GTGCTACCGG TTCTGCCACC AGATCTACGC CCTCTAGTTC CACTAGATGG CGGACGTTTT
GCTACCTCTG ATTTGAACGA CCTTTACCGT CGTGTAATCA ACCGTAACAA CCGTCTAAAG
CGTCTGTTAG ATCTAGCTGC TCCAGATATC ATCGTACGTA ACGAAAAGCG TATGTTGCAA
GAATCTGTTG ATGCGCTATT AGATAACGGT CGTCGTGGTC GTGCTATTAC AGGTTCTAAC
AAGCGTCCGC TTAAATCTTT GGCCGATATG ATCAAAGGTA AGCAAGGTCG TTTCCGTCAG
AACTTGCTAG GTAAGCGTGT TGACTATTCT GGTCGTTCGG TAATTACCGT AGGTCCAACT
TTACGTCTAC ACCAGTGTGG TCTTCCTAAG AAGATGGCAC TTGAGCTATT TAAGCCATTC
ATCTATGGCA AGCTAGAAGG TCGTGGCTTA GCTACAACTA TTAAAGCTGC TAAGAAGATG
GTTGAGCGCG AAGTTCCAGA AGTATGGGAC GTGCTAGATG ACGTGATCCG CGAACACCCA
GTGATGCTTA ACCGTGCACC AACACTGCAC AGACTAGGTA TCCAGGCATT TGAGCCAGTA
CTAATCGAAG GTAAAGCGAT TCAGCTTCAC CCGTTGGTTT GTGCGGCATA CAACGCCGAC
TTCGACGGTG ACCAAATGGC TGTTCACGTG CCACTAACGC TAGAAGCGCA GTTAGAAGCA
CGTTCACTAA TGATGTCTAC CAACAATATC CTTTCACCTG CAAACGGTGA GCCGGTGATC
ACACCGTCAC AGGACGTTGT ATTGGGTCTT TACTACACTA GCCGTGAGCG TATTAACGGC
AAGGGTGAAG GCATGGCATT CTCTGATGTG GCTGAAGCTG AAAAAGCTTA CCGCACAGGT
GTGGCTGAGC TACATGCTCG CGTTAAGGTA CGTATTACTG AAACTGCGAC CAATGAAGCT
GGCGAAAAAG TGAAGACACG TCGTATCGTT GATACAACGG TTGGTCGTGC ATTGCTTTCA
CAGATCCTGC CTAAAGGTCT TTCTTATGAT TTGGTTAACC AAAACATGGG TAAGAAGCAG
ATCTCTAAGC TATTGAACAC TTGTTACCGT CAACTAGGTC TTAAAGATAC AGTTATCTTT
GCTGACCAAT TGATGTATAC CGGTTTCCAT TTTGCAACTA TATCGGGTGC CTCTGTAGGT
ATTGACGATA TGGTTATTCC AGATGAGAAA TACACCTTAG TTGCTGATGC TGAAGCGGAA
GTTCTTGAAA TTCAAGAGCA GTTCCAATCA GGTCTAGTAA CAGCTGGTGA GCGTTACAAC
AAAGTAATCG ATATCTGGGC AAGCGCGAAC GAAAAAGTGT CTAAAGCGAT GATGGCTAAC
CTGTCTAAAG AGACAGTTGT TAACCGTGAT GGCGTTGAAG AACAACAAGA ATCGTTCAAC
AGCATCTACA TGATGGCCGA CTCAGGCGCT CGTGGTAGTG CTGCACAGAT TCGTCAGTTG
GCCGGTATGC GTGGTCTGAT GGCTAAGCCA GATGGCTCAA TCATCGAAAC CCCAATTGTG
GCTAACTTCC GTGAAGGTCT AAACGTATCT CAGTACTTTA TTTCTACTCA CGGTGCGCGT
AAAGGTCTTG CGGATACGGC ATTGAAGACA GCTAACTCTG GTTACCTGAC TCGTCGTCTA
GTAGACGTTG CTCAAGATTT AGTTGTAATC GAAGATGACT GTGGAACGTT CGAAGGTCTA
ACTATGAAGC CGCTTATTGA AGGTGGTGAT GTAGTTGAGC CGTTACGTGA ACGTGTTCTA
GGTCGTGTTG TTGCACAAGA TGTGTTCAAG CCTGGTACTG AAGAAGTACT TGTGCCACGC
AACACGCTTC TTGACGAAGC ATGGTGTGAC ATTGTTGAAG ACAACTCTAT CGATGAAATG
ATTGTTCGCT CAGTAATTAG CTGTGATACA GACTTCGGTG TGTGTAAAGC TTGTTACGGT
CGTGATTTGG CTCGTGGCCA TATCATTAAC CAAGGTGAAG CGATTGGTGT TGTTGCTGCT
CAGTCAATTG GTGAGCCAGG AACACAGCTT ACGATGCGTA CTTTCCACAT CGGTGGTGCG
GCATCTCGAG CTTCAGCTGA GAACAACGTT CAAGTTAAGA ACTCTGGTAC ACTTAAGTTA
CACAACGCTA AGTATGTAAC TAATAGTAAC GGTAAGCTTG TAATCGTATC TCGTTCTTCT
GAGCTAGCTA TCATTGATGA GCTAGGTCGT GAGAAAGAGC GTTATAAGGT TCCTTACGGT
ACTGTCCTAG AGAAATTGGA AGATGACGGT GTATCTGCTG GCGAAATTAT CGCTAAGTGG
GATCCGCATA CTCACCCAAT TATTTCTGAA GTAGCGGGTA GTATCAAGTT CGTAGATATG
ATTGAAGGTG TCACTATGAC ACGTCAAACA GACGAACTAA CTGGTCTTTC TTCAATCGTA
GTGCTTGAAG TTGGTCAACG TCCAACAGCT GGTAAAGAGA TGCGTCCTAT GATCCGTCTT
GTTGCTGCTG ATGGTGGCGA CTTGATGATT CCTGGTACTG AAGTACCAGC GCAATACTTC
TTGCCAGGTC ATGCGATTGT TAACCTTGAC GATAACGCAC CAATTAACGT TGGTGATGCA
TTAGCACGTA TTCCTCAAGA ATCTTCGAAG ACCCGCGATA TTACCGGTGG TCTACCACGC
GTAGCTGACT TGTTCGAAGC GCGTAAGCCA AAAGAGCCTG CAATTCTTGC TGAAGTATCG
GGTACTATCT CGTTCGGTAA AGAAACCAAA GGTAAGCGTC GTCTAGTTAT CACCCCAGCT
GATGGTGGTG AGCACTATGA AGAGATGATT CCTAAGTGGC GTAACCTTAA CGTGTTCGAA
GGTGAAAAAG TTGAACGCGG TGAAGTTATT GCCGATGGTC CAGAAGCTGC TCACGACATT
CTACGTCTAC GTGGTATCCA CAATGTGGCT AACTACATCG TGAATGAAGT ACAGGACGTT
TACCGTCTAC AGGGCGTTAA GATCAACGAT AAGCACATTG AGGTGATCAT TCGCCAGATG
CTGCGTAAGT GTGAGATCGT AGACGCTGGT GACAGTGAAT TCCTACCGGG TGAACAAGCT
GAAGTCTCTC GTGTTAAGAT CGCTAACCGC GAACTTGAAG CACAGGGTAA GCAGCCTGCG
ACATTCGAAC GTGAACTTCT TGGTATCACT AAGGCGTCAC TTGCGACTGA ATCGTTCATC
TCTGCAGCAT CGTTCCAGGA GACCACTCGT GTTCTTACTG AAGCGGCTGT TGGCGGAAAG
AGCGATAAGT TACGTGGTCT GAAAGAAAAC GTAATTGTTG GTCGTCTAAT CCCTGCTGGT
ACGGGTTACT CATACCACCA GAAGCGTGCT GAAGCTGCAG CTAAACCTGC TGCTACAGAA
GCACCAGCGA TTAGCGCGAG TGAAGCTGAG CAGAACCTTG CGGATCTTCT AAATCTAGCT
GGAAGCAACG ATTAA
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| Protein sequence | MKDLLKFLKQ QSKTEEFEGI KIGLASPDLI RSWSFGEVKK PETINYRTFK PEREGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIDLASP VAHIWFLKSL
PSRIGLMLDM TLRDIERVLY FESFVVIEPG MTSLERGQML TEENYLDALE EYGDEFDAKM
GAEAVLELLR AIELEKEIEM MREELPSINS ETRRKKVTKR LKLIEAFFTS GNKPEWMILK
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKM VEREVPEVWD VLDDVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RSLMMSTNNI LSPANGEPVI TPSQDVVLGL YYTSRERING KGEGMAFSDV AEAEKAYRTG
VAELHARVKV RITETATNEA GEKVKTRRIV DTTVGRALLS QILPKGLSYD LVNQNMGKKQ
ISKLLNTCYR QLGLKDTVIF ADQLMYTGFH FATISGASVG IDDMVIPDEK YTLVADAEAE
VLEIQEQFQS GLVTAGERYN KVIDIWASAN EKVSKAMMAN LSKETVVNRD GVEEQQESFN
SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIV ANFREGLNVS QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVI EDDCGTFEGL TMKPLIEGGD VVEPLRERVL
GRVVAQDVFK PGTEEVLVPR NTLLDEAWCD IVEDNSIDEM IVRSVISCDT DFGVCKACYG
RDLARGHIIN QGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV QVKNSGTLKL
HNAKYVTNSN GKLVIVSRSS ELAIIDELGR EKERYKVPYG TVLEKLEDDG VSAGEIIAKW
DPHTHPIISE VAGSIKFVDM IEGVTMTRQT DELTGLSSIV VLEVGQRPTA GKEMRPMIRL
VAADGGDLMI PGTEVPAQYF LPGHAIVNLD DNAPINVGDA LARIPQESSK TRDITGGLPR
VADLFEARKP KEPAILAEVS GTISFGKETK GKRRLVITPA DGGEHYEEMI PKWRNLNVFE
GEKVERGEVI ADGPEAAHDI LRLRGIHNVA NYIVNEVQDV YRLQGVKIND KHIEVIIRQM
LRKCEIVDAG DSEFLPGEQA EVSRVKIANR ELEAQGKQPA TFERELLGIT KASLATESFI
SAASFQETTR VLTEAAVGGK SDKLRGLKEN VIVGRLIPAG TGYSYHQKRA EAAAKPAATE
APAISASEAE QNLADLLNLA GSND
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