Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0177 |
Symbol | rpoB |
ID | 5660578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 197180 |
End bp | 201211 |
Gene Length | 4032 bp |
Protein Length | 1343 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641234699 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001500041 |
Protein GI | 157960007 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0862378 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA ACGTCCACGT GTTTTGGATA TTCCTTACCT TTTGTCAATC CAGTTGGACT CTTTTAAGAA GTTCACCGAT CAAGATCCTA CAGGTGAGCG TGGCTTTGAA GCTGCCTTCC GTAGCGTTTT TCCCATCAAG AGCTTTTCTG GTAATTCTGA GCTGCAATAT GTCAGCTATA AACTAGGCGA GCCTGTTTTT GATGTGAAAG AGTGTCAAAT CCGCGGTGTT ACATACTCTG CACCACTACG CGTTAAATTG CGTATGGTAC TGTATGACCG TGAAGCGGCA CCTGGCACAG TAAAAGACAT CAAAGAACAA GAAGTCTATA TGGGGGATAT CCCTCTTATG ACTGACAACG GTACCTTTGT TATCAATGGT ACTGAGCGTG TAATCGTATC TCAGCTACAC CGTAGCCCGG GCGTATTCTT TGATCATGAC CGTGGTAAAA CCCACTCTTC AGGTAAGGTG CTGTATAACG CACGTATTAT TCCTTACCGT GGTTCATGGT TAGACTTTGA ATTCGATCCG AAAGATGCAC TGTTTGTTCG TATTGACCGC CGTCGTAAGT TAGCGGCATC GATCATTCTG CGCGCTTTAG ATTATTCAAC TCAAGATATC CTTGACCTGT TCTTCGATCG CGTCAACTTT AAGATCAAGA AAGATTCACT AGTAATGGAT CTTGTTGCTG ACCGCCTACG TGGCGAAACA GCAAGCTATG ATATTAAAGA CGCTGAAGGC ACTGTTCTTG TTGAGAAGGG TCGTCGCATC ACTGCACGTC ACATTCGTCA ACTTGAAAAG ACAAACACAA CTGAGCTTGA AGTGCCAGTT GAGTACATCG CTGGTAAGAT TTCTGGACAA GATTATATCG ATCCAGATAC AGGCGAAGTA TTGGTTTCTG CAAACGCAGA CATCAGCCTA GAAGATCTAG CTAAGCTATC AATGGCTGGC ATCAAAGAGA TCAGCACTCT GTATATCAAT GAACTTGATA ACGGTGCCTA CATCTCTGAC ACACTACGTA TTGATTCAAC AACTAACCGC CTTGAAGCGC TAGTTGAAAT CTACCGTATG ATGCGTCCTG GTGAGCCACC AACCAAAGAT GCAGCAGAAG CACTATTCAA CAACCTATTC TTCAGCGAAG AACGTTATGA CCTTTCAAAA GTAGGTCGTA TGAAGTTCAA TCGTCGTCTA AGCATTGATG ACGATGAAGG TACTGGTATT CTTTCTAAAG AAGATATCGT TGCCGTGATG AAGAACATCA TCGCAATCCG TAACGGTTTC GACGAAGTGG ATGATATCGA TCATCTAGGT AACCGTCGTA TTCGTAGTGT TGGCGAAATG GCTGAAAACC AGTTCCGTGT TGGTCTAGTT CGTGTTGAAC GTGCCGTACG TGAGCGTTTA AGCCTTGGCG ATCTAAATGA GCTAATGCCT CAAGATTTGA TCAACGCTAA GCCAATCTCT GCAGCTGTTA AAGAATTCTT TGGCTCTTCA CAGCTTTCAC AGTTCATGGA CCAAAACAAC CCATTGTCAG AAGTGACGCA TAAGCGTCGT ATCTCTGCTC TAGGTCCTGG TGGTCTAACG CGTGAACGTG CTGGTTTCGA AGTTCGAGAC GTACATCCGA CTCACTATGG TCGTCTATGT CCAATCGAAA CGCCAGAAGG TCCAAACATT GGTTTGATCA ACTCGTTGTC AACCTTTGCT CGTACCAACA ACTATGGTTT CCTTGAAACA CCTTACCGTA AGGTTATCGA TGGTGTGGTT ACTGATGAGG TAGATTACCT TTCAGCAATC GAAGAAGGCC GTTACGTTAT TGCACAGGCT ATCGTTCAGT TAGATGAGAA CGGTCGCATG ATGGACGAGT TAATTGCTTG TCGTCATAAA GGTGATTCAA CCTTTATGGG TGCAGCTGAC ATCCAGTACA TGGACGTTTC ACCACAGCAG ATTATTTCTG TTGCGGCGTC ACTAATTCCG TTCCTGGAAC ACGATGATGC TAACCGTGCA TTGATGGGTG CGAACATGCA ACGTCAGGCA GTTCCAACAC TAAAGGCCGA TAAGCCATTA GTTGGTACTG GTATTGAGCG TACACTTGCT GTTGACTCAG GCGTGGTAGT TGCTGCTAAA CGTGGTGGTT ATGTTGACTA CGTTGATGCG AGCCGTATCG TTGTTAAAGT TAACGAAGCT GAGCTAACTC CAGGCGAAGC GGGTATCGAT ATCTACAACT TGACCAAATA CACGCGTTCT AACCAGAACA CTTGTATTAA CCAGCGTCCT TGTTGTTCTG TTGGTGACCC AATTGTTCGT GGCGACGTTC TTGCTGATGG CCCATCTACC GACTTAGGTG ATTTGGCTCT TGGTCAGAAC ATGCGTATCG CGTTCATGCC TTGGAACGGT TACAACTTCG AAGATTCGAT CTTAATCTCT GAGCGTGTAG CTCAGGAAGA CCGTTTCACA ACTATCCACA TTCAAGAGCT TTCATGTATC GCTCGTGATA CTAAGTTGGG TAGTGAAGAG ATCACAGCTG ATATTCCAAA CGTTGGTGAG TCTGCGCTTT CTAAGCTAGA TGAATCAGGT ATCGTTTATA TCGGTGCAGA AGTTAAGGGT GGTGACATCC TAGTTGGTAA AGTAACACCT AAAGGTGAAA CTCAGCTGAC TCCAGAAGAG AAACTTCTCC GTGCAATCTT CGGCGAAAAA GCCTCTGACG TTAAAGACAG CTCACTACGC GTACCTAACT CTGTTAAAGG TACTATCATC GACGTACAAG TATTTACTCG TGACGGCGTT GAGAAAGACA AGCGTGCTGT AGAAATTGAA GAGATGCATA TCGCCCAGGC GAAGAAGGAT TTGACTGAAG AGTTCCAAAT TCTTGAAGAT GGTGTTATCG GTCGTGCTCG CAACCTATTA ATTGGTGCTG GTTTCGATGA AGCCCAACTT GCTGCAATTC CACGTTCACA ATTGTTGGTT CAAACCATCG ATGATGAAGT TAAGCAAACT GAGCTAGAAC AACTAGCTGA GCAAGCGGAA GAGCTAAAAG CCGATTTCGA TAAGAAGTTT GAAATCAAGC GTCGTAAGAT CACTCAAGGT GATGACTTAG CACCTGGCGT ACTTAAGATC GTTAAGGTTT ACCTAGCGGT TAAGCGTACT ATCCAGCCTG GTGATAAGAT GGCGGGTCGT CATGGTAACA AGGGTGTAAT CTCTAAGATT TGTCCTGTTG AAGACATGCC ATACGACGAA AAGGGTAACC CAGTAGATAT CGTATTGAAT CCACTAGGTG TACCTTCACG TATGAACATC GGTCAGGTAC TTGAAGTTCA TATGGGTGCT GCAGCGAAAG GCATCGGTAA TCGTATTACT GAGATGCTGG AAGAGCAGCG CGAATTGGCA GAACTTCGCG GATACATCAA GCAGGTTTAT GAACTAGGTG ACGAAGTAAT TCAAAAAGTC GACATCGATT CATTTACTGA TGATGAAATC TTGCGTCTTG CTAAAAACCT AAAAGGCGGT GTACCGATTG CTACACCTGC GTTTGATGGC GCCAAAGAGA AAGAGATCAA GCAGATGCTT GAGCTTGCAG GCTTGCCACA ATCTGGTCAG TTAACACTGA TTGATGGTCG TACTGGTAAC GAATTTGAGC GTAAGGTAAC CGTTGGTTAC ATGTATATGC TTAAGCTTAA CCACTTGGTT GACGACAAGA TGCACGCTCG TTCTACGGGT TCGTACAGTC TTGTTACTCA GCAGCCATTG GGTGGTAAAG CACAGTTCGG TGGTCAGCGT TTCGGTGAGA TGGAAGTATG GGCACTTGAA GCTTACGGTG CAGCATATAC CCTTCAGGAA ATGCTAACTG TTAAGTCAGA TGATGTTAAC GGTCGTACTC AGATGTATAA GAACATCGTC GACGGTAACC ATCAGATGCA ACCAGGTATG CCTGAATCTT TCAACGTATT GTTGAAAGAG ATCCGTTCAC TTGGTATCAA CATTGAGTTA GATACTAAGT AA
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Protein sequence | MVYSYSEKKR IRKDFGKRPR VLDIPYLLSI QLDSFKKFTD QDPTGERGFE AAFRSVFPIK SFSGNSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLYDREAA PGTVKDIKEQ EVYMGDIPLM TDNGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR GSWLDFEFDP KDALFVRIDR RRKLAASIIL RALDYSTQDI LDLFFDRVNF KIKKDSLVMD LVADRLRGET ASYDIKDAEG TVLVEKGRRI TARHIRQLEK TNTTELEVPV EYIAGKISGQ DYIDPDTGEV LVSANADISL EDLAKLSMAG IKEISTLYIN ELDNGAYISD TLRIDSTTNR LEALVEIYRM MRPGEPPTKD AAEALFNNLF FSEERYDLSK VGRMKFNRRL SIDDDEGTGI LSKEDIVAVM KNIIAIRNGF DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLSTFA RTNNYGFLET PYRKVIDGVV TDEVDYLSAI EEGRYVIAQA IVQLDENGRM MDELIACRHK GDSTFMGAAD IQYMDVSPQQ IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLKADKPL VGTGIERTLA VDSGVVVAAK RGGYVDYVDA SRIVVKVNEA ELTPGEAGID IYNLTKYTRS NQNTCINQRP CCSVGDPIVR GDVLADGPST DLGDLALGQN MRIAFMPWNG YNFEDSILIS ERVAQEDRFT TIHIQELSCI ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE KLLRAIFGEK ASDVKDSSLR VPNSVKGTII DVQVFTRDGV EKDKRAVEIE EMHIAQAKKD LTEEFQILED GVIGRARNLL IGAGFDEAQL AAIPRSQLLV QTIDDEVKQT ELEQLAEQAE ELKADFDKKF EIKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI CPVEDMPYDE KGNPVDIVLN PLGVPSRMNI GQVLEVHMGA AAKGIGNRIT EMLEEQRELA ELRGYIKQVY ELGDEVIQKV DIDSFTDDEI LRLAKNLKGG VPIATPAFDG AKEKEIKQML ELAGLPQSGQ LTLIDGRTGN EFERKVTVGY MYMLKLNHLV DDKMHARSTG SYSLVTQQPL GGKAQFGGQR FGEMEVWALE AYGAAYTLQE MLTVKSDDVN GRTQMYKNIV DGNHQMQPGM PESFNVLLKE IRSLGINIEL DTK
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