Gene Spea_0172 details

Gene Information

• Locus tag: Spea_0172
• ID: 5660573
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 193942
• End bp: 194493
• Gene Length: 552 bp
• Protein Length: 183 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 641234694
• Product: NusG antitermination factor
• Protein accession: YP_001500036
• Protein GI: 157960002
• COG category: [K] Transcription
• COG ID: [COG0250] Transcription antiterminator
• TIGRFAM ID: [TIGR00922] transcription termination/antitermination factor NusG

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0000000325102
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGAAG CTACTGAAGC TAAAAAGAGA TGGTATGTTA TTCAAGCGTT TTCCGGCTAT 
GAAGGCCGTG TATGTAAAAC TTTGCTTGAA CATATCAGAA TGCACGAAAT GGAAAACTAC 
TTTGGTGAGG TGCTAGTTCC TACTGAAGAA GTGGTTGAAA TGCGTGCAGG CCAACGTCGT 
AAGAGCGAAC GTAAATTTTT CCCTGGCTAT GTACTAGTAC AGATGGAAAT GAATGATGAA 
AGCTGGCACT TGGTTAAGAG TATTCCACGT GTAATGGGCT TCATCGGTGG TACGTCTGAT 
CGTCCTGCCC CTATTTCTGA TAAAGAAGCT GATGCAATTC TTCAGCGTCT TCAAGAAACT 
ACAGAGTCTC CAACGCACCG CGTTATGTTT GAGCCTGGTG AAGTTGTTCG TGTTAATGAC 
GGACCTTTTG CCGACTTCAA CGGTACTGTT GAAGAAGTGG ATTATGAGAA GAACCGCGTT 
AAGGTTTCTG TGATGATCTT CGGTCGCTCG ACTCCTGTTG AACTTGATTT TAGTCAGATT 
GAAAAAAGCT GA 

 

Protein sequence

MTEATEAKKR WYVIQAFSGY EGRVCKTLLE HIRMHEMENY FGEVLVPTEE VVEMRAGQRR 
KSERKFFPGY VLVQMEMNDE SWHLVKSIPR VMGFIGGTSD RPAPISDKEA DAILQRLQET 
TESPTHRVMF EPGEVVRVND GPFADFNGTV EEVDYEKNRV KVSVMIFGRS TPVELDFSQI 
EKS