| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0146 |
|---|
| Symbol | |
|---|
| ID | 5660547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 163491 |
|---|
| End bp | 164714 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641234659 |
|---|
| Product | general secretion pathway protein F |
|---|
| Protein accession | YP_001500010 |
|---|
| Protein GI | 157959976 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCAT TTGAATACAA AGCATTAGAC AAAACGGGTA AGCAGAAAAA AGGTGTTGTC
GAAGCGGATA CCGCAAGGCA TGCACGTACT CAGCTAAGAG AGCAGCGCTT AATGCCACTG
GAGATAACTC CAGTAGTAGA GAAAGAGAGC AAGACTAAGG CCGCAGGTTT TAGCTTTTTA
AAGCGTGGTA TTTCAACTGC AGAGCTTGCA CTTATTACCC GTCAGATTGC GACTCTAGTG
GCTGCTGGAC TCCCTGTTGA AGAGGCATTA AAAGCCGTTG GTCAACAATG CGAGAAGGAC
CGTTTAGCCA GTATGGTGAT GGCGGTGCGA TCTCGGGTGG TTGAAGGTTA TAGCCTTGCC
GATTCTATGG CAGAGTTTCC ACATATATTC GATGAATTGT ATCGAGCTAT GGTGGCATCG
GGCGAAAAAT CCGGTCACTT AGAAGTGGTA CTGAATCGTC TCGCCGATTA CACCGAGCGT
CGCCAGCAGC TAAAGAGTAA AATGACCCAA GCTATGATCT ATCCTATCGT ACTGACAGTT
GTCGCCATAG GTGTGATCGC AATTCTGCTT GCCGCCGTAG TGCCGCAAGT GGTGGGGCAG
TTTGAGCATA TGGGGCAGGA GTTACCTTGG ACTACTGAAC TATTGATCGC CTCATCAGAC
TTTATCCGTG ATTATGGCCT AATTGTTCTG GCTGTTATCG TCGGTTTGTT CTTTATCGCC
AAACGTTTAC TCGTTTCACC TAAAAATCGC ATGAAATACG ACAGCATGTT GCTGCGCCTA
CCTGTGATCA GCAAGGTGAG TAAAAGCCTT AATACGGCAC GTTTTGCTCG TACATTAAGT
ATTTTAACGG CCAGCTCTGT ACCGCTACTC GATGCAATGC GTATCGCGAG TGATGTACTG
ATCAACGTTA AAGTGAAAGC CGCAGTCGAA GATGCAACAC TAAGGGTGCG TGAGGGCACA
AGTTTGGGAA CGGCACTAGC CAACACTAAA CTTTTCCCAC CTATGATGCT CTATATGATT
ACCTCTGGTG AAAAAAGTGG TCAACTTGAG CAGATGCTTG AGCGCGCCGC CGATAACCAA
GACCGAGATT TTGAGTCGAA TGTGACGATA GCCTTGGGGG TATTTGAGCC TATGCTAGTT
GTTAGTATGG CTGCTGTGGT TCTATTTATT GTTTTAGCGA TTCTTCAGCC AATATTAGCG
CTGAATAATA TGATTAGTGG TTAA
|
|---|
| Protein sequence | MPAFEYKALD KTGKQKKGVV EADTARHART QLREQRLMPL EITPVVEKES KTKAAGFSFL
KRGISTAELA LITRQIATLV AAGLPVEEAL KAVGQQCEKD RLASMVMAVR SRVVEGYSLA
DSMAEFPHIF DELYRAMVAS GEKSGHLEVV LNRLADYTER RQQLKSKMTQ AMIYPIVLTV
VAIGVIAILL AAVVPQVVGQ FEHMGQELPW TTELLIASSD FIRDYGLIVL AVIVGLFFIA
KRLLVSPKNR MKYDSMLLRL PVISKVSKSL NTARFARTLS ILTASSVPLL DAMRIASDVL
INVKVKAAVE DATLRVREGT SLGTALANTK LFPPMMLYMI TSGEKSGQLE QMLERAADNQ
DRDFESNVTI ALGVFEPMLV VSMAAVVLFI VLAILQPILA LNNMISG
|
|---|
| |