| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0144 |
|---|
| Symbol | |
|---|
| ID | 5660545 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 159791 |
|---|
| End bp | 161923 |
|---|
| Gene Length | 2133 bp |
|---|
| Protein Length | 710 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641234657 |
|---|
| Product | general secretion pathway protein D |
|---|
| Protein accession | YP_001500008 |
|---|
| Protein GI | 157959974 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATA AGCGGATTAG ACGCAGATTA ATTGCCGGTA TGGTGATGGG GGCTTCCTTA
CTGGCCCCAC AACTTGCATG GTCTGAACAA TATGCGGCTA ACTTTAAAGG CACAGATATC
CAAGAGTTTA TCAATATTGT TGGTAAAAAC TTGAATCGAA CTATTATTGT CGACCCAACC
GTACGCGGAA AAATCAATGT TCGTAGTTAC GATCTACTAA ACGACGAACA GTATTACCAG
TTCTTCCTCA ACGTATTACA AGTCTATGGT TATGCTGTTG TCGAGATGGA CAACAACATC
ATAAAGGTAA TCAAAGATAA AGATGCTAAA ACGGCATCAA TCCGTGTCGC CGATGATGAT
GCACCAGGCT TGGGTGACGA GATGGTTACC CGTATCGTCG CACTGTATAA CACAGAAGCA
AAGCAGCTAG CCCCTCTATT ACGTCAGCTA AACGATAACG CCGGCGGCGG TAACGTAGTT
AACTACGATC CGTCCAATGT TTTGATGATC TCTGGTCGTG CGGCCGTGGT TAATAAACTG
GTAGAGATCG TGCGCCGCGT AGATAAGCAA GGTGATACAG CCGTTGAAGT GGTTAAGCTT
GAATATGCCT CAGCCGGTGA AATCGTTCGT ATTATAGATA CCTTGTACCG TTCAACGGCT
AATCAAGCAC AGATGCCTGG CCAAGCACCA AAAGTTGTTG CCGATGAGCG TACCAACGCT
GTGGTGGTAA GTGGTGATGA GAAGAGTCGT GAGCGAGTGG TTAAGCTGAT TAAAAACCTA
GATGCAGAGC AAGCAAGTAC GGGTAACACT AAGGTCCGCT ACCTGCGTTA TGCAAAAGCC
GAAGATTTAG TCGAGGTGTT AACGGGTTTT GCTGAACAAC TTGTCGATGA TAAAGGCACC
TCACAAGGTG GCGGCAGCAA GCGTCGAAAT GAAATTAATA TCATGGCCCA CAATGACACC
AATGCCTTGG TGATTAGTGC GGAACCAGAT CAGATGCGCA CCATCGAGAG CGTGATTAAT
CAGCTGGATA TTCGCCGAGC ACAAGTACTG GTTGAAGCGA TCATTGTAGA AGTTGGCGAA
GGTGATGATG TTGGTTTTGG TGTTCAGTGG GCAACCGAAG CTGGCGGTGG TACTCAGTTT
AATAACCTAG GCCCAACCAT TGGTGAAATT GGTGCAGGTG TTTGGCAGGC TCAAGGTGAA
GAGGGCTCAA CAGTCTGTAA CGACGGTACT TGTACCGAGA ATCCTGACAC TCGTGGTGAT
ATTACCTTGC TTGCTCAAGC GCTTGGTAAG GTCAATGGTA TGGCGTGGGG CGTGGCAATG
GGCGATTTTG CTGCCTTGAT TCAAGCCGTG TCGAGTGATA CCAAATCAAA TGTTCTTGCT
ACACCATCTA TCACTACGCT TGATAACCAA GAAGCCTCAT TTATCGTAGG TGATGAAGTC
CCTATTTTAA CCGGTAGTCA AAATTCTAGT AACGGTAACA GCAATCCATT CCAAACGGTT
GAGCGTAAGG AAGTGGGCGT AAAGCTTAAA GTTGTTCCTC AAATTAACGA AGGAAGCTCG
GTTAAGCTGA CAATCGAGCA GGAAGTTTCA GGTATTAACG GTAAGACTGG CGTCGATGTA
ACCTTTGCTA CTCGTCGTTT AACCACAACG GTAATGGCTG ATTCAGGCCA AATCGTGGTA
CTCGGTGGTT TGATTAAAGA AGAGGTGCAA GAGTCAGTAC AAAAAGTCCC GTTCTTGGGT
GATATCCCGA TCATTGGCCA CCTATTTAAG TCCTCTTCTA GCGGTAAGAA AAAAACCAAC
TTGATGGTAT TTATCAAGCC AACGATTATC CGCGACGGTA TGACCATGGA AGGCATCGCA
GGACGTAAGT ATAATTACTT CCGAGCGCTG CAACTCGAGC AGCAGGAACG CGGCGTTAAC
TTAATGCCAA ATACCGATGT GCCGATCCTC GAAGAGTGGA ATCAAGCTGA TTATCTGCCT
CCTGAAGTCA ACGACGTGCT GAACCGTTAC AAAGAAGGTA AAGGTTTAGA CACAAAGATG
CGTGAAACCG ATCCGGCGCT AAAGTCTATC TCGAATAGCA AAGATGCCGA TAAGCAAGGC
ACTGATACAG ATAAAGAAAC TTCTGATGAG TGA
|
|---|
| Protein sequence | MNNKRIRRRL IAGMVMGASL LAPQLAWSEQ YAANFKGTDI QEFINIVGKN LNRTIIVDPT
VRGKINVRSY DLLNDEQYYQ FFLNVLQVYG YAVVEMDNNI IKVIKDKDAK TASIRVADDD
APGLGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLMI SGRAAVVNKL
VEIVRRVDKQ GDTAVEVVKL EYASAGEIVR IIDTLYRSTA NQAQMPGQAP KVVADERTNA
VVVSGDEKSR ERVVKLIKNL DAEQASTGNT KVRYLRYAKA EDLVEVLTGF AEQLVDDKGT
SQGGGSKRRN EINIMAHNDT NALVISAEPD QMRTIESVIN QLDIRRAQVL VEAIIVEVGE
GDDVGFGVQW ATEAGGGTQF NNLGPTIGEI GAGVWQAQGE EGSTVCNDGT CTENPDTRGD
ITLLAQALGK VNGMAWGVAM GDFAALIQAV SSDTKSNVLA TPSITTLDNQ EASFIVGDEV
PILTGSQNSS NGNSNPFQTV ERKEVGVKLK VVPQINEGSS VKLTIEQEVS GINGKTGVDV
TFATRRLTTT VMADSGQIVV LGGLIKEEVQ ESVQKVPFLG DIPIIGHLFK SSSSGKKKTN
LMVFIKPTII RDGMTMEGIA GRKYNYFRAL QLEQQERGVN LMPNTDVPIL EEWNQADYLP
PEVNDVLNRY KEGKGLDTKM RETDPALKSI SNSKDADKQG TDTDKETSDE
|
|---|
| |