| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0130 |
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| Symbol | |
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| ID | 5660531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 142174 |
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| End bp | 145392 |
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| Gene Length | 3219 bp |
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| Protein Length | 1072 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641234643 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001499994 |
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| Protein GI | 157959960 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACCCG TATTAAGCCG ATTGAGCTTG AAACAGAAAT TATTTCTATC TGCATCTTTA
CCTATGTTTA TATTGGTATT GCTTGCAGTA CTGAGTGCAT CGACGCTCAT TAAGCAGTAC
CAACATGCTT CAGCAAATGT GCTCACCACA AAAGTGACTT TAGGCATAGA AAATGTCATC
TATGAGCTAC AGAAAGAGCG CGGACTCTCG GCAGGCTACC TAAGTAGCGA CGGTCGCTTA
TTTAAACAAG AGCTACAACA GCAATGGCAG ACGACCGATA AGGTGTTTCA AGAGTTAGTA
TTCAATTCAG CTCTCGATAA AACAATCAAT ACCGTCAAGA GTGACACCGA ACTTTTTAAT
ACACTGCAGG AACAACTCAG TAAAGCCAGC TTGGCGCGTC AACAGCTCAG TATCGCCCGC
CAAAAAATTA TCGAATTAAA TACCCCCGAA AACTTTAGTT TTTACTCGCG TCTCACTCAA
AAGCTGATTA ACTTCGTCTC TCAATTACGC TTTAAGAGTG ATAACTCCTA TCAGGTGTTA
GTACAGGCCG ATCTAGTCAA CATGCTCAGG ATCCAGGAAC TATCAGGCCA AGAGCGCGGC
TTAGTCAATA AACTACTTTC TGCACCGGTA TTAGAGGCTG GCGCTTTCAA GCAGATCGCA
CAGATTAGAA CACAACTCGA CAATGCAATT ACCAATGCCG TTTCGGTTAT GACACAGGAA
AATCGCACCA GCTTTTCCCT ATTGATGGAC AGCCAGCCGC AGCAACTGAT ATCTGGTTAC
CGCTCGCAGA TCCAGCAACA AGTTAATCTG ATAGAACAGA CCGAAATAAT CAATGATCTG
ATTGGTTATG GAGGGCTTAG CTATAACTTT AATGGTTACC TAACCACATT AAACCCAAGC
TACCTAGCTA ACTTTCGAGA AAACTACTTC GCCTTAAAAA GCGCGTTAAC TCATTTAACT
AACAATCACA CTCTAACCCC TAAGCAACAA GAGCTAATAA AGACCATTAA GCAAACTGCC
GACAGCTACC AAGAATATGT TACCGAAACC GAACTAAAGC AGTTGCCCGC TCCGGAAGCG
ACATTGGAGC TGCTGGCACA AGATATCGCC TTACATGACA GCCTTTATCA ACTACTAAAA
CAGCAGCCAG TGATTGATAG CGAGTCATGG TGGCAAGCAG CAACGGCGGG CATTGACGCC
CTCCACCAAC TCAATACCCA GCTGACGGCT AAAATAGTCC ATCAAAATCT GATTGAGAAA
CAGCAGATCC TCTCTTATCT CTATATCAGC CTCTTTGCAG GCTTACTCTT CTTCTACATC
GTCTATCTCG TCGGTAGAAA CATTGCCAAC GACCTTATCG ATTCGGTGAG AGGCATAGTT
GATGATGTAG AGAAACTAGC AAAAGACCCA AGTCTTGAAC TCGCTCTAGA GGTTAAGGGC
AAAGATGAAC TGACACAGAT AGCCCTAGCC GTAAACCAAA TGGTATCGGA GCGCATGAAA
TCGAGACGCG CGCTGCATCA AGCCTCGGCC GTATTCAGGC ACTCAGCCGA AGGGATTATC
GTCACCGATG CTAACAACCA CATCGAGCTA GTTAACCCCG CATTTACTAA GATCACCGGT
TATACCCTTG ACGATGTCAA AGGCAAGAGC CCCAGCATCT TAAGCTCTGC CCATCACCAA
GAGGATTTTT ACCAACAGCT GTGGCGGTCT TTATCTAGCA AGAATAGCTG GGAGGGAGAG
ATCTGGAATA AACGCAAAGG TGGTAAGATC TACCCTGAGT ACCTAAAGAT AACAGCGGTG
AAGAACAGTA AAAATAAAAC AATTCAGCAT ATCGGCCTAT TTTTAGACAT CAGCAACAAC
AAGCAGTATG AGCAGGATAT CTGGTATAAG ACCAACTTCG ACTCCTTAAC CAAACTGCCT
AATCGTCACC TATTCTCCTC TAGGCTGCAG CAAGCCATAG ATAGCGCACA CAATACCAAT
AGCCAAGTCG CCATCTTCTT TATCGATCTA GACAGATTTA AGTTTATTAA CGAGCTTCAT
GGCCACGCAG CAGGCAACAA GGTACTTAAG CAGTCGGCGA CACGACTCGA AGCCGTACTT
GGACCTGATG ACTCTATCGC CCGTATCGGC GGCGATGAGT TTGTCGTCAT ATCGCCGCAA
ACTGGCAACG TTGGCGCCGA ACAATTGGCG CAGAAGCTCA GTGATACGCT GGCTAAGCCT
TACTTATTCG ACAATAAAGA GACCATTATC TCCTCTAGTT TTGGTATCGC CTTCTATCCT
GAAGATGGTC AAGATATTGA AATGTTGCTG CATAACTCTG AAACCGCCAT GTATCAAGCC
AAGCGCGATG GCCGAGCACA TTATCAATAT TTCTCCCCAG AGATGAATGT TGAAATGCTT
GAGCGTATGC ACCTTGAACA GAGGCTGCGT AAGGCTGTCA AACAGTCAGA GTTCTACCTT
GAATATCAGC CAGTTATCGA TATGCATAGC GGCGAGGTGA CCAGTGTTGA GGCGCTTGTC
CGCTGGCAAG ATCCAGATTA TGGTGTCATC TCACCACAGG CCTTCATCCC TATCGCCGAA
GAGGCAGGAT TGATTGAACC TTTAGGCGAA TGGATCTTAC AGCAAGCCTT GTCAGATCTT
GCACAGTGGC ATGCCCAAGG CTTGATGCTC AAGATGGCGA TTAATGTCTC GGCACGCCAA
TGCATTCACT CCAGAGACAT TAGCTTTTTC GACATACTCA AACAAACATT GGCCAAGCAC
GACATCGCCG CCGAAAATTT ACATATCGAA ATCACCGAGA GCATGCTGAT AGAAGACAAG
CCGCAATGTT TACAGACCTT AGAATCGATA AAACAGCTGG GTGTCGATAT CTACCTAGAT
GACTTTGGCA CAGGCTATTC GGCACTCAGC TATCTGACTC AATGCCCTAT TTCAGTCATC
AAGATCGATA AGAGCTTTAT CGATAATGCA TTGGACAATC CATCTGATGC TAAATTGATT
AAGGCGATTG TAATGATGGC ACAAAGCTTA GAGATGCCAC TGGTGGCTGA AGGAGTTGAA
ACGGTTGAAC AATGGCACTT CTTACGTAAC TTAGGCTGTG ATTACGCCCA AGGTTACTTG
ATGTCTAAGC CTCTTGCCAA GGCAGAATTA GTTGAATTTT TACGCCACGC TAAGCCATTT
CAGTACCTAG AGATAGGCAC TGAACTCAGC GCAGTCTAA
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| Protein sequence | MQPVLSRLSL KQKLFLSASL PMFILVLLAV LSASTLIKQY QHASANVLTT KVTLGIENVI
YELQKERGLS AGYLSSDGRL FKQELQQQWQ TTDKVFQELV FNSALDKTIN TVKSDTELFN
TLQEQLSKAS LARQQLSIAR QKIIELNTPE NFSFYSRLTQ KLINFVSQLR FKSDNSYQVL
VQADLVNMLR IQELSGQERG LVNKLLSAPV LEAGAFKQIA QIRTQLDNAI TNAVSVMTQE
NRTSFSLLMD SQPQQLISGY RSQIQQQVNL IEQTEIINDL IGYGGLSYNF NGYLTTLNPS
YLANFRENYF ALKSALTHLT NNHTLTPKQQ ELIKTIKQTA DSYQEYVTET ELKQLPAPEA
TLELLAQDIA LHDSLYQLLK QQPVIDSESW WQAATAGIDA LHQLNTQLTA KIVHQNLIEK
QQILSYLYIS LFAGLLFFYI VYLVGRNIAN DLIDSVRGIV DDVEKLAKDP SLELALEVKG
KDELTQIALA VNQMVSERMK SRRALHQASA VFRHSAEGII VTDANNHIEL VNPAFTKITG
YTLDDVKGKS PSILSSAHHQ EDFYQQLWRS LSSKNSWEGE IWNKRKGGKI YPEYLKITAV
KNSKNKTIQH IGLFLDISNN KQYEQDIWYK TNFDSLTKLP NRHLFSSRLQ QAIDSAHNTN
SQVAIFFIDL DRFKFINELH GHAAGNKVLK QSATRLEAVL GPDDSIARIG GDEFVVISPQ
TGNVGAEQLA QKLSDTLAKP YLFDNKETII SSSFGIAFYP EDGQDIEMLL HNSETAMYQA
KRDGRAHYQY FSPEMNVEML ERMHLEQRLR KAVKQSEFYL EYQPVIDMHS GEVTSVEALV
RWQDPDYGVI SPQAFIPIAE EAGLIEPLGE WILQQALSDL AQWHAQGLML KMAINVSARQ
CIHSRDISFF DILKQTLAKH DIAAENLHIE ITESMLIEDK PQCLQTLESI KQLGVDIYLD
DFGTGYSALS YLTQCPISVI KIDKSFIDNA LDNPSDAKLI KAIVMMAQSL EMPLVAEGVE
TVEQWHFLRN LGCDYAQGYL MSKPLAKAEL VEFLRHAKPF QYLEIGTELS AV
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