| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0122 |
|---|
| Symbol | |
|---|
| ID | 5660523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 134632 |
|---|
| End bp | 135111 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641234635 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001499986 |
|---|
| Protein GI | 157959952 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGAG AACTATTACA GAGTTTGTAT CGATACTGTA TTTGCCTCAC AGGTCATAGC
GCTCAAGCAG AGGATTTGCT GCAAACGGCG GTAGAGAATT GGCTAAAGGG TTGTAGTCGA
CCGGTTCAAT TAAAAGCTTA CCTTAGAAAG GTGATTCGTA ATCAGTTTAT CGATGACTGC
CGTAGACTCA AATTGGTGGA CTTTGAACCG CTCGATGACA ATGCTCCCGT GCTACTCGAT
GAAACATGCC TAGAAGAAAT TGAGATACAG CACAACCTCA TAGAACATCT ATTTGAGTTA
CTTAATCCAG CGGAGCGAGA GGTGCTATAC CTTTGGGCCA TAGAAGGTTA TAGCGCAGCT
GAGATAGCAG AAGATCTACA GCAACCCCGT GGCACTATTT TGTCTCGTTT ACACCGTATT
AAACTTAAAA CAGCCGATCT TGCACTCGGT GATTCGGCGC AAACTATCGG AGGGCAATAA
|
|---|
| Protein sequence | MDRELLQSLY RYCICLTGHS AQAEDLLQTA VENWLKGCSR PVQLKAYLRK VIRNQFIDDC
RRLKLVDFEP LDDNAPVLLD ETCLEEIEIQ HNLIEHLFEL LNPAEREVLY LWAIEGYSAA
EIAEDLQQPR GTILSRLHRI KLKTADLALG DSAQTIGGQ
|
|---|
| |