| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0106 |
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| Symbol | tdh |
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| ID | 5660507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 118993 |
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| End bp | 120018 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641234619 |
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| Product | L-threonine 3-dehydrogenase |
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| Protein accession | YP_001499970 |
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| Protein GI | 157959936 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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| TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase
[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.588963 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAGCAC TCAGCAAGCT AAAGCCTGAA GAAGGCATCT GGATGGTAGA TGCGCCTAAA
CCAGAAGTGG GCCATAACGA TCTATTAATT AAAATTCGTA AGACCGCTAT CTGCGGTACC
GACGTTCATA TCTACAACTG GGATGAGTGG TCACAAAACA CCATTCCTGT GCCTATGGTT
GTTGGTCATG AATATGTGGG TGAAGTTGTC GGTATGGGCC AAGAAGTACG TGGCTTTACT
ATTGGCGACC GTGTTTCCGG TGAAGGCCAT ATTACTTGCG GCCATTGCCG TAACTGTCGT
GGTGGTCGCA CTCACTTATG CCGCAATACT TCGGGTGTCG GCGTTAACCG TGAAGGTGCC
TTTGCTGAAT ACCTAGTTAT CCCAGCATTT AACGCCTTTA AGATCCCTGA TGATATCTCT
GATGATTTGG CCTCTATCTT CGATCCATTT GGTAACGCGG TGCATACTGC GCTGTCATTC
GATCTTGTCG GTGAAGACGT TCTTATTACT GGTGCAGGCC CAATTGGCAT TATGGCAGCG
GCCGTATGTC GTCACGTTGG TGCGCGCCAT GTGGTGATCA CCGATGTGAA CGAATACCGC
CTAGAGCTAG CCGAGAAAAT GGGAGCGACC CGTGCAGTTA ACGTCGCCAA AGAGAATCTT
GAAGATGTAA TGCAAGAGCT CGGTATGACA GAAGGCTTCG ATGTAGGTCT AGAGATGTCA
GGCGTGCCTT CGGCATTCCA CTCTATGCTC GACACCATGA ACCACGGTGG CAAAATTGCC
ATGCTAGGTA TTCCAGGTGG CGACATGGCT ATCGACTGGA GCAAGGTGAT CTTTAAAGGG
CTTATCATTA AGGGCATTTA TGGCCGTGAG ATGTTTGAGA CCTGGTATAA GATGGCAAGC
CTTATCCAAT CTGGACTCGA TATTTCGCCA ATCATCACCC ACCATTATAG TATTGATGAG
TTCCAGCAAG GCTTTGATGC CATGCGTTCA GGTCAATCAG GTAAAGTGAT CCTCAACTGG
GATTAA
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| Protein sequence | MKALSKLKPE EGIWMVDAPK PEVGHNDLLI KIRKTAICGT DVHIYNWDEW SQNTIPVPMV
VGHEYVGEVV GMGQEVRGFT IGDRVSGEGH ITCGHCRNCR GGRTHLCRNT SGVGVNREGA
FAEYLVIPAF NAFKIPDDIS DDLASIFDPF GNAVHTALSF DLVGEDVLIT GAGPIGIMAA
AVCRHVGARH VVITDVNEYR LELAEKMGAT RAVNVAKENL EDVMQELGMT EGFDVGLEMS
GVPSAFHSML DTMNHGGKIA MLGIPGGDMA IDWSKVIFKG LIIKGIYGRE MFETWYKMAS
LIQSGLDISP IITHHYSIDE FQQGFDAMRS GQSGKVILNW D
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