| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0104 |
|---|
| Symbol | |
|---|
| ID | 5660505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 117717 |
|---|
| End bp | 118556 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641234617 |
|---|
| Product | rhomboid family protein |
|---|
| Protein accession | YP_001499968 |
|---|
| Protein GI | 157959934 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.465909 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAGA TTGGCAGACT TCCTAACAAC CGAGCAGCAC AGGCTCTCAT TGACTACCTC
AAAGGGCTAA ATATTGATTG TGAGTTAGTG CCGACCGAAC AAGGCGTGGC ACTGATGATC
CATGATCAAA ACCACTTAGA TCGTGCCCAG CGCGAATTCC AAGCCTTTAT TCATAATCCC
TACGACGAAA AGTATCTCGC AGCGTCATGG GAGAATGGCG ATACTCGCAC CACACTCGAT
TATGGCAGCC CGAGTCTGCA ACTGGTCAGT CAGTTTATTA CCGGTGCGGG ACCTTTAACC
TTGCTGGTCT TCTTTACCTG CGTCGTCATC TACGCTGCGA TGAATCTTGG CTTTGCTAAC
CCTATCTTCG AACAGTTGTC TTTTTTTGGT GCCACCTCCC CAGCCACACT GAGTGAATTC
TGGCGGATTT TTACCCCGAG TTTGCTACAC TTTTCTGCCA TGCACATCAT CTTTAACTTA
CTCTGGTGGT GGTATCTAGG CGGTAAGATT GAAAACAAAC TCGGCTTTAC CCCACTATTT
ATTCTATTAA TCGTTGGCGG TACGCTACCT AATATCTTGC AATACTACAT GGCAGGGCCT
GGCTTTGGCG GTCTGTCTGG CGTGGTCTAT GCTGTTGTCG GTTACACATG GATTATGGGC
GTAAAACGGC CCGAATCAGG CATAGGTCTG CCTCCAGCTT ATATTGGCTT TATGTTGTTA
TGGCTGGTCT TTGGCTTTAC CGATATGTTT GGCCTCTCTA TTGCCAACGG TGCCCACTTA
GGTGGTTTAT TGGTAGGGTT GATTCAAGGG TTTGTTGATA GTAAGACTCG TAAGATTTAA
|
|---|
| Protein sequence | MIEIGRLPNN RAAQALIDYL KGLNIDCELV PTEQGVALMI HDQNHLDRAQ REFQAFIHNP
YDEKYLAASW ENGDTRTTLD YGSPSLQLVS QFITGAGPLT LLVFFTCVVI YAAMNLGFAN
PIFEQLSFFG ATSPATLSEF WRIFTPSLLH FSAMHIIFNL LWWWYLGGKI ENKLGFTPLF
ILLIVGGTLP NILQYYMAGP GFGGLSGVVY AVVGYTWIMG VKRPESGIGL PPAYIGFMLL
WLVFGFTDMF GLSIANGAHL GGLLVGLIQG FVDSKTRKI
|
|---|
| |