| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0071 |
|---|
| Symbol | |
|---|
| ID | 5660472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 83843 |
|---|
| End bp | 84568 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641234584 |
|---|
| Product | flagellar basal-body rod protein FlgF |
|---|
| Protein accession | YP_001499935 |
|---|
| Protein GI | 157959901 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG4787] Flagellar basal body rod protein |
|---|
| TIGRFAM ID | [TIGR03506] fagellar hook-basal body proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.931219 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTATATA CCGCAGCGAG TGGTGCGTCA CGGGTAATGG AGGCGCAGGC AATACGCGCC
AATAACCTAG CCAATGCTGA TACAACGGGT TTCAAGGCCG ATCTTGAACG GGTCAATGCC
AAGGTCATAG CTCCAATTGG AGACAGCCTA CAGACTCGCG TACTCGCTCA AACACAGGGC
AGCGGATTCA GCCGACAAAG CGGCACCCTG AACCCCACTG GCCGCACGCT TGATCTGGCG
ATCAACAATG CAGGTCTGTT CTCGGTAATG ACGGCTGAGG GAGAGGGTTA CACCCGCGCA
GGTGCTATGA CTGCAGATGC AACCGGCCAG CTAACCCTAG ATGGTCGCCC CGTTGCTGGG
TTAGCGGGTC CAATTGTACT GCCAGAGTAC CGTGAACTCT TCATTGGCGA TGACGGCAGA
ATTAACATTA TTGCCGACGC CGATGGTGTT ATCGAAGAAG TTGGCCAGCT TAAGCTGGTT
AATCCAGATA TCGCCCTAAT GAGTAAAGGC TTAGACGGTT TGCTTTACCC ACAAGACCGC
CAGCCTTTAC CCGCTAGCGA AGAAGTGACG GTAAGCAGTG GCTTTTTAGA AGCCAGTAAT
GTGCAGGCTG TCGGTGAATT AATTGCAGCA ATGGATTTAA GCCGCCAGTT CGAGGTGCAA
GTCAAACTCA TGAAGAGCGC CGAAAAGCTC GCAGAGGCGG GTAATCGCCT ACTGCGTGAT
GCGTAG
|
|---|
| Protein sequence | MLYTAASGAS RVMEAQAIRA NNLANADTTG FKADLERVNA KVIAPIGDSL QTRVLAQTQG
SGFSRQSGTL NPTGRTLDLA INNAGLFSVM TAEGEGYTRA GAMTADATGQ LTLDGRPVAG
LAGPIVLPEY RELFIGDDGR INIIADADGV IEEVGQLKLV NPDIALMSKG LDGLLYPQDR
QPLPASEEVT VSSGFLEASN VQAVGELIAA MDLSRQFEVQ VKLMKSAEKL AEAGNRLLRD
A
|
|---|
| |