| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0040 |
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| Symbol | |
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| ID | 5660441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 42821 |
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| End bp | 43636 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641234547 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001499904 |
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| Protein GI | 157959870 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0102694 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGAAC GATATGCAGT ATTTGGTAAT CCAATTGGTC ACAGTAAGTC GCCAGCCATA
CATTCCATGT TTGCCACAGA AACGGCTCAG TCATTAACTT ATGAGGCAAT CTTAGCGCCA
ATTGATGCAT TTGAAGCGAC ATTCAAAGAG TTTGTGACTA ATAAGGGCTA TGGAGCCAAT
GTTACCGTGC CTTTTAAAGA GCAAGCATTT GCACTTTGTG ATGAGTTAAG TGAGCAAGCT
AAGCTAGCAG GCGCAGTAAA CACTCTATCA GTACTGGCCG ATGGCAAAAT TCGTGGTGAT
AATACAGATG GGCTAGGCCT AGTTGCCGAT CTGCAACGAA ACTTAGGCAG TCTTACAGGG
CTTAAAGTTC TTCTGGTTGG GGCTGGTGGT GCGGCTCGGG GTAGTGTGCT GCCATTATTG
CAGGCAGGAA TTGCCAAGCT TAGTATCGTT AACCGCACAC AGGCGAAAGC AGAGATTCTG
GCTGAACTCT TTTCGAGCTA TGGCGATGTG GTTTCTTTAC CGATAAGTCA TACGGGCAAA
AGCTACGATG TGATTATTAA TTCAACCTCC TCAAGTTTAA GTGGTGAGGT GCCCAATATC
AGTAGCGATA GCATTACATC ACAAACCGTT TGCTACGATA TGATGTACGG CAAAGAGCCA
ACGTCATTTA ATGTATGGGC TAAGGCGCAG GGTGCCAAAC AGACCGTAGA TGGTTTAGGC
ATGCTGGTGG GACAAGCTGC AGAAAGCTTT AATATTTGGC GCAAGGTAAG GCCAAGTGTT
GAGCCTGTAT TAACTCAGCT TCGAGCCGAA CTCTAA
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| Protein sequence | MTERYAVFGN PIGHSKSPAI HSMFATETAQ SLTYEAILAP IDAFEATFKE FVTNKGYGAN
VTVPFKEQAF ALCDELSEQA KLAGAVNTLS VLADGKIRGD NTDGLGLVAD LQRNLGSLTG
LKVLLVGAGG AARGSVLPLL QAGIAKLSIV NRTQAKAEIL AELFSSYGDV VSLPISHTGK
SYDVIINSTS SSLSGEVPNI SSDSITSQTV CYDMMYGKEP TSFNVWAKAQ GAKQTVDGLG
MLVGQAAESF NIWRKVRPSV EPVLTQLRAE L
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