| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0031 |
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| Symbol | def |
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| ID | 5660432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 34584 |
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| End bp | 35183 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641234538 |
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| Product | peptide deformylase |
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| Protein accession | YP_001499895 |
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| Protein GI | 157959861 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCGCTAA CGACTAAAAT TGAGCCATTA GCCAAAGTCA GTATAACTAA CTGGCTCAAA
TTTGACAGAC TTGTTAAGAG TTTAGGTATG AGTTTATTAA AAGTTTTACG TTTTCCCGAC
GAAAGATTAC GAACAGTTGC ACAGCCGATC ACAGAGTTTA ACCCTGCCCT TCAAACACAA
ATCGACGATA TGTTCGAAAC TATGTATGAA GAGAAGGGAA TTGGCCTAGC GGCAACACAG
GTTGATTATC ACCATCAACT TATCGTTATG GACCTTCAAG ATGAGGTTGA ACGCCCTAAA
GTGTTCATCA ATCTTGAAAT TACCGCCAAG AGTGGTGACT TCTGTAACGA AGAGGGGTGC
CTATCTGTCC CAGGTGTTTA CGCAAAAGTG GACCGCGCCG AATTTGTCAC CATCAAGGCG
CTAGATCGTG ATGGTAAAGA GTTCACCTTG GAAGCCGATG GCTTATTCGC TATCTGTTTA
CAGCATGAAT TAGACCACCT ATCGGGCAAG CTGTTTGTTG ACTATCTATC GCCTCTAAAG
CGTCAACGTA TCAAGCAGAA ACTCGAAAAA GCGGCTCGTC TCGAAGCGAA ACAAGGATAA
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| Protein sequence | MPLTTKIEPL AKVSITNWLK FDRLVKSLGM SLLKVLRFPD ERLRTVAQPI TEFNPALQTQ
IDDMFETMYE EKGIGLAATQ VDYHHQLIVM DLQDEVERPK VFINLEITAK SGDFCNEEGC
LSVPGVYAKV DRAEFVTIKA LDRDGKEFTL EADGLFAICL QHELDHLSGK LFVDYLSPLK
RQRIKQKLEK AARLEAKQG
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