Gene Spea_0003 details

Gene Information

• Locus tag: Spea_0003
• Symbol: recF
• ID: 5660404
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 2849
• End bp: 3931
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 641234510
• Product: recombination protein F
• Protein accession: YP_001499867
• Protein GI: 157959833
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1195] Recombinational DNA repair ATPase (RecF pathway)
• TIGRFAM ID: [TIGR00611] recF protein

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0130388
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTCTTA GCCGTCTCCA TATCGAATCT TTTCGTAATA TATCTTCTGC GCAACTGCAG 
CCGGGTGACG GGCTGAACTT AATCTATGGC CACAATGGCA GTGGCAAAAC CAGTATTCTT 
GAGGCTATTT ACTTCCTCGG TATGGGCCGC TCCTTTCGAA GCCATCTTTC CCAGCGTGTG 
ATTAAGAATG ACGATGATGC ATTGACCCTG TTTGCCAATA TGGAAAGCGG TGATGAGCAG 
AGTAAGATAG GTTTACGTCG TTTTAGAAGC GGTGATATTG AAGTTAAAAT CAATGGTGAT 
AAAGTAAAGC GTTTATCGAC GCTCGCTGAA ACTTTACCGA TCCAAGTGAT CACACCTGAG 
AGTTTTTCTC TGCTGTTCGA AGGCCCTAAA TCTAGGCGTC AGTTTATTGA TTGGGGAGCG 
TTTCATTCTG ACCCACGTTT TTATGCTGCA TGGGTCAATG TACGTCGAAT TTTAAAGCAG 
CGAAATCAGT TACTCAGAGA TGGTTCGCCC TATAGTTCGA TTCAATTTTG GGATAAAGAA 
TTTATTCGTT ATGCTGAACT GGTAACCGAC ATAAGAAAGC AATATGTAGA CTCGTTAAAT 
GAGCTACTTA AGGGTATAAT CGGAGAGTTT TTACCTCAGG TTGATGTTAA GGTTTCTTTT 
ACCCGAGGGT GGGATGCAAA AACCGAGTAT GCACAGTTAC TCGAGACGCA ATACCCTAGA 
GATTTAGCCA CAGGCTATAC CGTCAGTGGG CCGCATAAAG CTGATTTACG TTTGCGGGTA 
GGGACACTAC CTGCACAAGA TGCTTTATCT CGTGGCCAGC TGAAATTGTT AGTCTGTGCA 
TTACGCATTG CACAGGGAAA GTTGCTAAAA CAACAAATAG ATAAAAAAAG TATTTATCTG 
GTGGACGATC TTCCATCGGA ATTGGATGCA AAGCATAGAA AACTATTGTT ACAGCAATTA 
GCGGATACCG GGGCACAAGT TTTTGTCACG GCTATTGAGC CTGCAGCAAT AGTAGATTCG 
TTAATCACGC CGCCAAGTAA GATGTTCCAT GTGGAACAAG GTCGTGTAAC GGTAATTGAA 
TAA 

 

Protein sequence

MSLSRLHIES FRNISSAQLQ PGDGLNLIYG HNGSGKTSIL EAIYFLGMGR SFRSHLSQRV 
IKNDDDALTL FANMESGDEQ SKIGLRRFRS GDIEVKINGD KVKRLSTLAE TLPIQVITPE 
SFSLLFEGPK SRRQFIDWGA FHSDPRFYAA WVNVRRILKQ RNQLLRDGSP YSSIQFWDKE 
FIRYAELVTD IRKQYVDSLN ELLKGIIGEF LPQVDVKVSF TRGWDAKTEY AQLLETQYPR 
DLATGYTVSG PHKADLRLRV GTLPAQDALS RGQLKLLVCA LRIAQGKLLK QQIDKKSIYL 
VDDLPSELDA KHRKLLLQQL ADTGAQVFVT AIEPAAIVDS LITPPSKMFH VEQGRVTVIE