| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_4887 |
|---|
| Symbol | |
|---|
| ID | 5602732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 5417070 |
|---|
| End bp | 5419874 |
|---|
| Gene Length | 2805 bp |
|---|
| Protein Length | 934 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640940459 |
|---|
| Product | DNA polymerase I |
|---|
| Protein accession | YP_001481107 |
|---|
| Protein GI | 157373118 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
|---|
| TIGRFAM ID | [TIGR00593] DNA polymerase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000312634 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000015928 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAAA TTGCAGAAAA CCCACTAATC CTGGTTGACG GTTCCTCTTA CCTCTACCGC
GCTTATCACG CCTTCCCTCC GCTGACCAAC TCCGCGGGTG AACCGACCGG GGCAATGTAC
GGCGTGCTGA ATATGCTGCG TAGCCTATTG CTGCAGTACC AGCCAAGCCA TGTTGCGGTG
GTGTTTGATG CCAAAGGAAA AACCTTCCGT GATGAGCTGT TCGCAGAATA CAAATCACAC
CGGCCACCTA TGCCGGACGA TCTGCGCGCG CAAATCGAGC CGTTGCACAA AATGGTCAAG
GCCATGGGGT TGCCGCTGTT GGTCACGCCC GGCGTCGAAG CCGACGACGT CATAGGCACG
CTGGCGCTGG AAGCTGAAAA GGCCGGTCAT GCGGTGCTGA TCAGCACTGG CGATAAAGAC
ATGGCGCAGT TGGTCACGTC GAACGTCACC TTGATCAACA CCATGAACAA CACCATTCTC
GGCCCGCAGG AAGTGTGCGA CAAATACGGT ATTCCGCCGG AGCTGATTAT CGACTTCCTG
GCGCTGATGG GGGATGCCTC GGATAACATC CCAGGCGTAC CAGGCGTGGG TGAGAAGACC
GCGCAGGGGC TGTTACAGGG CCTGGGTGGG CTGGATATGC TCTATGCGAA TCTGGACAGT
ATCGCCACGC TCAGCTTCCG TGGAGCCAAG ACCATGGCGG CCAAACTCGA GCAGAACAAA
GAGATGGCAT ACCTCTCTTA CAAGCTGGCC ACTATCAAAA CTGACGTTGA GCTGGATATT
ACCTGCGCCG ATCTCCAGGT GTCTCCGCTG GACGTCGATA CGTTGCAACA ATTGTTCAAA
CAGTATGAAT TTAAGCGCTG GCTGGCAGAT GTCGAAGCCG GCGTTTGGCT GGAAGGCAAG
AAAGGTGCCG GTGTGAAAGC AACCAGCGCG GCGAAATCTT CTGCCAGTGC AGTGGCAGAA
ACTGGAAAAG CCCAGGCAGA AGCAACGCTA TCGCAAGAGG GTTACGTCAC CATTCTGGAT
GAAGACACCT TCACTGAGTG GCTGGAAAAA CTGAAAAAAG CCGAAGTGTT CGCGTTTGAT
ACCGAAACCG ACGGCCTGGA TACTCTGACC GCTAACCTGA TCGGTCTGTC ATTTGCCATT
GCTCCGGGTG AAGCCGCTTA TCTGCCGGTG GCACATGACT ATCTTGATGC GCCAACGCAG
TTGGATCGAG CTCATGTCCT GGCTACGCTG AAACCGCTGC TGGAAGACGA GAAAGCGTTG
AAGGTCGGGC AAAACCTGAA GTTTGATATG AGCCTGCTGG CGCGTTACGA CATTACGCTG
CGCGGTATTG CCTTTGATAC CATGCTGGAG TCCTATGTGC TGGACAGCGT GGGCGGCCGT
CACGATATGG ACAGCTTGTC CGATCGTTAC CTTGGTCATA AAACCGTGAC CTTCGAAGAG
ATTGCCGGTA AGGGTAAAAA GCAGCTCACC TTCAACCAGA TTGCACTGGA GCAGGCAGCA
CCTTACGCCG CTGAAGATGC TGACGTGACG CTGCAATTAC ATTTGGCGAT GTGGCCGCAA
TTGAAGGAAA GCGCCGAGCT GTTGACGGTT TTCAATCAGA TTGAAATGCC GCTGTTGCCG
GTGTTGTCGC ATATCGAGCG AACCGGGGTG CTGATTGATC AAAGCATTTT GGCCACCCAT
TCCATCGAAT TGACCAAGCG CCTGGCTGAG TTGGAAATTC AGGCCCATGA GCTGGCGGAA
GAGCCTTTCA ACCTGGCGTC GACCAAACAG TTGCAGGCGA TCCTGTACGA AAAACAAAAG
TTGCCAATAC TGAAGAAAAC TCCGGGCGGT GCACCTTCGA CTAATGAAGA AGTGCTGGCC
GAGTTGGCGC TGGATTACCC ATTACCGAAG GTAATTCTGG AATACCGTGG CCTGGCGAAG
CTGAAAACCA CCTATACCGA CAAGCTGCCG CTGATGATTA ACCCGGTGAG TGGTCGGGTG
CATACCTCCT ATCACCAGGC GGTGACGGCT ACCGGGCGTC TCTCTTCCAG CGATCCCAAC
CTGCAGAATA TTCCGGTGCG TAACGACGAA GGGCGCCGTA TCCGTCAGGC ATTTATTGCC
CCTGAAGGCT ACCGCATTGT TGCTGCCGAC TATTCACAAA TTGAACTGCG TATTATGGCT
CACCTGTCAC AGGATGAGGG GTTGCTGAAA GCCTTTGCGG CTGGTGAGGA TATTCACCGC
GCCACGGCGG CTGAGGTGTT TGGCCTGCCG CTCGATAAGG TGACCAACGA GCAGCGCCGC
AGCGCCAAGG CGATTAACTT CGGCCTGATT TATGGCATGA GCGCATTTGG TCTGGCGCGT
CAGTTAGGGA TCCCACGCGG TGAAGCGCAG CGTTACATGG ATCTTTACTT CGAACGTTAT
CCGGGCGTGC TGGAGTATAT GGAGCGCACC CGTCAGCAGG CCGCCAGCCA GGGCTACGTC
AGCACGCTGG ATGGCCGCCG TCTGTATCTG CCGGATGTCA GCTCCAGCAA CGGTATGCGT
CGCAAGGCGG CCGAGCGAGC GGCGATTAAT GCCCCAATGC AGGGGACGGC AGCCGACATC
ATCAAACGTG CGATGATCGA AGTGGACGCC TGGCTGCAAG CTCAGGAAAA GCCACTGGTA
CGTATGATTA TGCAGGTACA CGATGAACTG GTGTTCGAGG TACATGAGTC GGTGCTTGAG
GAATCCAACC AGCGTATTCG TGAGCTGATG GAAAACAGTA TGGCGCTGGC CGTGCCGCTG
AAAGTCGACG TTGGCGTGGG TGCCAATTGG GATGAAGCGC ACTGA
|
|---|
| Protein sequence | MAQIAENPLI LVDGSSYLYR AYHAFPPLTN SAGEPTGAMY GVLNMLRSLL LQYQPSHVAV
VFDAKGKTFR DELFAEYKSH RPPMPDDLRA QIEPLHKMVK AMGLPLLVTP GVEADDVIGT
LALEAEKAGH AVLISTGDKD MAQLVTSNVT LINTMNNTIL GPQEVCDKYG IPPELIIDFL
ALMGDASDNI PGVPGVGEKT AQGLLQGLGG LDMLYANLDS IATLSFRGAK TMAAKLEQNK
EMAYLSYKLA TIKTDVELDI TCADLQVSPL DVDTLQQLFK QYEFKRWLAD VEAGVWLEGK
KGAGVKATSA AKSSASAVAE TGKAQAEATL SQEGYVTILD EDTFTEWLEK LKKAEVFAFD
TETDGLDTLT ANLIGLSFAI APGEAAYLPV AHDYLDAPTQ LDRAHVLATL KPLLEDEKAL
KVGQNLKFDM SLLARYDITL RGIAFDTMLE SYVLDSVGGR HDMDSLSDRY LGHKTVTFEE
IAGKGKKQLT FNQIALEQAA PYAAEDADVT LQLHLAMWPQ LKESAELLTV FNQIEMPLLP
VLSHIERTGV LIDQSILATH SIELTKRLAE LEIQAHELAE EPFNLASTKQ LQAILYEKQK
LPILKKTPGG APSTNEEVLA ELALDYPLPK VILEYRGLAK LKTTYTDKLP LMINPVSGRV
HTSYHQAVTA TGRLSSSDPN LQNIPVRNDE GRRIRQAFIA PEGYRIVAAD YSQIELRIMA
HLSQDEGLLK AFAAGEDIHR ATAAEVFGLP LDKVTNEQRR SAKAINFGLI YGMSAFGLAR
QLGIPRGEAQ RYMDLYFERY PGVLEYMERT RQQAASQGYV STLDGRRLYL PDVSSSNGMR
RKAAERAAIN APMQGTAADI IKRAMIEVDA WLQAQEKPLV RMIMQVHDEL VFEVHESVLE
ESNQRIRELM ENSMALAVPL KVDVGVGANW DEAH
|
|---|
| |