| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_4728 |
|---|
| Symbol | |
|---|
| ID | 5603074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 5223414 |
|---|
| End bp | 5224184 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640940294 |
|---|
| Product | transcriptional regulator, CadC |
|---|
| Protein accession | YP_001480949 |
|---|
| Protein GI | 157372960 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3710] DNA-binding winged-HTH domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000608596 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTA TAATTAATAA AAGAATCATC TTTCATGAAG ACAAATCTAC GATAGAGTTA
CTGGATGATA CTATCGAACC CGTTATGCTC ACTGCTACCC TTTGCAGGGT CTTATCTTTG
TTGGTTAAGA ATAATGATTT GCTGCTGACA CGGGAGTTCA TTTTATCGAG TGCTTGGGAT
GAGTATGGCA AGTCGTCTAC GCACAGTAAC CTGAATAACT ATATCTCAAT GATCAGGAAG
ATATTCAACT CATTTGGGGA GAGTGACATT ATTATCACTG TACCTCGGCA AGGGTTTATG
TTTTCTGCCG GAGAGGTTAA TACTGTTGAT GGTGAAACCA TACAGGGCTC AGTCAGCAGT
GACTCGCTTG CTGCTGTGGT GGAAAGAAAG TGGCATTCTG CTCACCTCAT TGCGCTTGCG
TTAATGGCTG CAGCGATTGT GATGATTGCA GCTTATCCTT TGTTCAATAA ATATAATTCT
GCAAAAATGA GTGAAATTGG CCGGGTCGAA AACTGTAAGG TAGAGGTTTT GACTGCTGCT
CATTACGTCA AACATGCTGA TGATGAACTG GCAAAAGTAA AACCCCTGAT CGAAAAGTTA
AAATTTAACT GTGCTGTCCC AGCAACCATT TATTATTTTA ATAGCAAAAT GCTGGTTAGC
CATACAGGCA TGAATAATGC TGTATCTTTT CTGTCTTACT GCCCCACGTC AAGTGTAAGG
GGAGTTGAAG CCCAATGTGA GAATGTTCAT GAAATTGTCG ATCAAAAATA A
|
|---|
| Protein sequence | MKFIINKRII FHEDKSTIEL LDDTIEPVML TATLCRVLSL LVKNNDLLLT REFILSSAWD
EYGKSSTHSN LNNYISMIRK IFNSFGESDI IITVPRQGFM FSAGEVNTVD GETIQGSVSS
DSLAAVVERK WHSAHLIALA LMAAAIVMIA AYPLFNKYNS AKMSEIGRVE NCKVEVLTAA
HYVKHADDEL AKVKPLIEKL KFNCAVPATI YYFNSKMLVS HTGMNNAVSF LSYCPTSSVR
GVEAQCENVH EIVDQK
|
|---|
| |