| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_4647 |
|---|
| Symbol | |
|---|
| ID | 5603141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 5132732 |
|---|
| End bp | 5134918 |
|---|
| Gene Length | 2187 bp |
|---|
| Protein Length | 728 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640940213 |
|---|
| Product | glycogen branching enzyme |
|---|
| Protein accession | YP_001480868 |
|---|
| Protein GI | 157372879 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
|---|
| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.616835 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTAC TTCCCGATCG TGACGTGATT GATCAGCTTT TCTCCGGCAA TTCTGCCGAC
CCCTTTTCTC TGCTGGGTAT GCATGCGGCC GATAACGGTC TGCAGGTGCG TGCGCTGTTG
CCTGATGCCA GCGAAGTCTG GCTGCTGGAG CAGCAAACCG GCCGGCGTCT GGTGCAGCTA
AACTGCGACG ATGCGCGCGG TTTTTTCAGC GCCACGGTAC CGCGTCGCAA AACCCCGTTC
CGCTATCAAT TCGAAGTTCG CTGGCAGGAT CATCAGCAGA TCGTCGACGA TCCCTACCGT
TTCGGCACCC TGCTGCAGGA TATTGACAGT TGGTTGCTGG CCGAAGGCAC CCATTTGCGT
CCTTATGAAC GTCTGGGGGC ACACCTCAGT ACGCTTGATG ACGTCGAAGG CGTCAGCTTT
GCCGTTTGGG CGCCGAATGC CCAGCGCGTC TCGGTGGTTG GCGAGTTTAA CTTCTGGGAC
GGCCGCCGCC ACCCGATGCG CCTGCGGCGT GAAAACGGGA TTTGGGAGCT GTTCCTGCCG
GGGGTGAAAG CCGGGCAATT GTACAAGTAC GAAATTATAG ACTGCTACGG CAATACCCAG
TTGAAGGCCG ATCCTTACGC CTTCGAGGCG CAAATGCGGC CGGATACCGC GTCGCTGGTG
ACGCCGTTGC CGGAGGTGGT GGAAAACACC CCGCAACGCC AGCGGGCCAA TGATTTTGAC
CGACCGATTT CGATCTACGA GGTGCATCTT GGCTCGTGGC GGCGTCACAC CGACGATAAT
TTCTGGCTCA GCTATGGCGA ACTGGCCGTG CAGCTGATTG ATTACGTCAA GGACATGGGG
TTCACCCATA TCGAGCTGCT GCCGATTAAC GAGCATCCGT TTGACGGCAG TTGGGGCTAT
CAGCCGTTGG GGTTGTACGC CCCGACCCGG CGTTTCGGTA CCCCGGCCGA CTTCAAAGAT
TTTGTCGCGG CAGCGCACCG GGCGGGCATC AACGTGATCC TGGACTGGGT GCCGGGGCAT
TTCCCCAGCG ATGCCTATGG CCTGGCGAAT TTCGACGGCA CCGCGCTGTA TGAATACGCC
GACCCGCGCG AAGGCTTCCA TCAGGACTGG AATACCCTGA TTTACAACTA TGGCCGCCAT
GAGGTGCGTA ACTATCTGGC GGGTAATGCC CTTTACTGGT TGGAACGCTA TGGCATCGAC
GCATTGCGTG TCGATGCGGT GGCTTCGATG ATCTACCGCG ATTACAGCCG TGCCGAAGGC
GAATGGGTAC CGAACTACTA CGGTGGCAAC GAAAATCTGG AGGCCATTGC CTTCCTGCGT
TACACCAACC AGAGCGTCGG CAAGGAGCGG CCCGGTGCGG TGACGCTGGC GGAAGAGTCC
ACCGATTACC CAGGGGTAAC GCTGCCGCCG GAATCTAACG GGCTGGGGTT CCACTACAAA
TGGAATCTGG GTTGGATGCA CGACACGCTC AACTACATGC AATGCGACCC GGTACACCGC
AAGTATCATC ACAATCAGAT GACCTTCGGC ATGTTGTACG CCTACACCGA AAACTTCGTG
CTGCCGATTT CCCATGACGA AGTGGTGCAC GGCAAGAAAT CGATTCTCGA CCGCATGCCC
GGCGACGCCT GGCAGAAGTT TGCCAACCTG CGTGCCTACT ACGGCTTTAT GTGGGCGCAC
CCGGGCAAAA AACTGCTGTT TATGGGCTGC GAGTTCGCCC AGGGGCGTGA ATGGAACTTC
GACAGCAGCC TCGACTGGCA TCTGCTGGAA GGGCTGGACG GCTGGCATCA CGGGGTGCAG
CGGTTGGTGC GCGATCTTAA CCATTGCTAT CAACAGCAGG CGCCGTTGTA TGAGCGTGAC
TACCGGCCGG ACGGCTTTGA GTGGCTGGTG GTGGACGACC ATGACAATTC GGTGTTTGCC
TTCGCCCGCT ATGATGCGCA TGGCAATGAG CTGATCGCTG TCAGCAACTT TACCCCGGTG
CCACGTCACC ACTATCGCAT CGGAATTTCC CGCCCCGGTG AGTACCGGGA AATCCTCAAT
ACCGACTCGC ACCATTATCA CGGCAGCAAT ACCGGCAACC AGGGGCGCGT GGTGTCCGAG
CAGATAGGCA ACCACGGCCG CGAGCATTCG ATTAGCGTGA CCGTGCCGCC GCTGGCGACC
ATCTACCTGC TGCGGGAGGC GCAATGA
|
|---|
| Protein sequence | MPVLPDRDVI DQLFSGNSAD PFSLLGMHAA DNGLQVRALL PDASEVWLLE QQTGRRLVQL
NCDDARGFFS ATVPRRKTPF RYQFEVRWQD HQQIVDDPYR FGTLLQDIDS WLLAEGTHLR
PYERLGAHLS TLDDVEGVSF AVWAPNAQRV SVVGEFNFWD GRRHPMRLRR ENGIWELFLP
GVKAGQLYKY EIIDCYGNTQ LKADPYAFEA QMRPDTASLV TPLPEVVENT PQRQRANDFD
RPISIYEVHL GSWRRHTDDN FWLSYGELAV QLIDYVKDMG FTHIELLPIN EHPFDGSWGY
QPLGLYAPTR RFGTPADFKD FVAAAHRAGI NVILDWVPGH FPSDAYGLAN FDGTALYEYA
DPREGFHQDW NTLIYNYGRH EVRNYLAGNA LYWLERYGID ALRVDAVASM IYRDYSRAEG
EWVPNYYGGN ENLEAIAFLR YTNQSVGKER PGAVTLAEES TDYPGVTLPP ESNGLGFHYK
WNLGWMHDTL NYMQCDPVHR KYHHNQMTFG MLYAYTENFV LPISHDEVVH GKKSILDRMP
GDAWQKFANL RAYYGFMWAH PGKKLLFMGC EFAQGREWNF DSSLDWHLLE GLDGWHHGVQ
RLVRDLNHCY QQQAPLYERD YRPDGFEWLV VDDHDNSVFA FARYDAHGNE LIAVSNFTPV
PRHHYRIGIS RPGEYREILN TDSHHYHGSN TGNQGRVVSE QIGNHGREHS ISVTVPPLAT
IYLLREAQ
|
|---|
| |