| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_4412 |
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| Symbol | |
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| ID | 5602814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Serratia proteamaculans 568 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009832 |
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| Strand | - |
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| Start bp | 4885291 |
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| End bp | 4887222 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640939974 |
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| Product | regulatory protein CsrD |
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| Protein accession | YP_001480634 |
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| Protein GI | 157372645 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000683384 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGATTTA CCACCAAGCT CTCTGCATTG ATCACCCTGC TTGTTGCTCT GGCGATGTTT
TTGATGCTGA TGGGCTGCTC ATACAGTTAC TTTTACGTCA CTCAGGAGAG GCTGGATCGC
CGCTTCAATT CGCTGATGAC CTCGCTCGAT CAGGCCATGC TGCGTGAATC TCCACAGGAA
CAGGAACAAT GGTTACCGCT GGTGATGCGT CCGCTTGGTA TCGTGGCCGT CAGCGTGGAT
ACCAGCCACA GCAATCTTCT TTCTTATCAT CTGCCAACGG TAAAGCAGCC CTGGGAATCG
CTCAACGGCT ACCGGCAGGT TTCCCTGCCG TTGATGCAGC ATCCCGGCGC TTCGCTACGC
ATTACCTATA TTGACCCTTT CGCCAGCGAC GTGCGTTCGT TGCAATCCAC TGCGGCTGTC
ACTTTGTCGA TCGTCGTGAT GGTGGTTATC TTGCTGCTCA GTTTGCGTTG GTTACGCGAT
CAGGCCGACG GGGAGGACCG GCTGGAACGC CGTGCACGCC GTATTCTTAA TGGCGAACGA
GAGAGCGTGA TGCAGGGCGA CGTGCGCGAA TGGCCGGCAA ACGTCAGCGG AGCACTCGAT
CGCCTGCTGG CGGATCTGGC GGAAGCGCGC GAGGAGCGTA GCCGGGTCGA TACGCTGATC
CGCGCCTTTG CCGCTCAGGA CGCCAAAACC GGGCTGAACA ACCGATTGTT CTTTGATAAC
CAACTGACCA CGCAGTTGGA GGAGGAAGGT TCGCACGGCA TTGTCATGAT GGTGCGATTA
CCGGATTTCG ACACGCTGCG GGAAACCCAC GGCAACAGTG CGGTGCAAGA ACTGATGTAT
TCGCTGGTCA ATCTGTTGTC GACCTTCGTG ATGCGCTACC CGGCGGCGTT GCTGGCGCGC
TATTTCCACA GCGATTTCAC CGTTTTGTTG CCGCATCGCA CGCTGAAAGA GGCGGACGGC
ATTGCTTCAC AGTTGGTTCA TGCCATTGAC GCCTTGCCTT CGACGGCGCT TATCGATCGC
GAGGCGTTTT TGCATATCGG TATTGTGGCC TACCGCAGTG GACAAAGTAC CGAACAGGTG
ATTGATCATG CAGAGCAGGC CACGCGCCAC GCGACGCTGC AGGGGGAAAA CGGCTGGTAT
GTCTACGACA GCCAGGTGCC GGAAAAAGGG CGCGGCAGCG TCAAATGGCG CACTCTGTTG
GAACAGGTTC TGGCACGGGG CGGGCCACGG TTGTACCAGA AACCGGCAGT GACGGTGGAG
GGGGAAGTTC ATCACCGGGA GATCATGAGC CGGATATACG ATGGGACCCA GGAACTGCTG
CCATCTGAAT ATATGCCGTT GGTGCAGCAG TTGGGGCTGG CGGAGAGTTA CGACCGCCAG
CATTTGAGTC GCATTCTTCC TTTACTGGCG CTGTGGCCTG AAGAAACGCT GGCATTTACG
CTGTCCGTAG ATTCATTATT GCAACGCACT TTCCAGCGTT GGCTGCGTGA TAGCCTGTTA
CAGTGTGAAA AAAGTCATCG TCGGCGAATT CTGATTGAAC TTGCAGAGGC AGACGTGTGT
CAACATATCG ACCGTTTACG CCCGGTGTTG AGATTACTCT CTGGATTGGG GTGTCGTCTG
GCCGTGTCCC AGGCGGGGTT AACCGTAGTT AGTACCTCCT ATATCAAGTC CTTACCGGTG
GAACTGGTCA AGCTCCACCC TGGTTTGGTG CGGAGTATTG ATAAGCGGGA TGAGAATCAG
CTGTTCGTTC AGAGCCTGAC GGGTGCCTGC GAAGGGACCA GTACCCAGGT TTTTGCCGCC
AGCGTGCGGA CGCGTAATGA ATGGCAGACG CTGAAAGATC GCGGGATCCT CGGCGGGCAG
GGTGACTTTT TCGCGTCGCC GGAACCGATA GACGCAGGGC GTAAAAAATA TTCGCGTCGT
TATCGCGTTT AA
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| Protein sequence | MRFTTKLSAL ITLLVALAMF LMLMGCSYSY FYVTQERLDR RFNSLMTSLD QAMLRESPQE
QEQWLPLVMR PLGIVAVSVD TSHSNLLSYH LPTVKQPWES LNGYRQVSLP LMQHPGASLR
ITYIDPFASD VRSLQSTAAV TLSIVVMVVI LLLSLRWLRD QADGEDRLER RARRILNGER
ESVMQGDVRE WPANVSGALD RLLADLAEAR EERSRVDTLI RAFAAQDAKT GLNNRLFFDN
QLTTQLEEEG SHGIVMMVRL PDFDTLRETH GNSAVQELMY SLVNLLSTFV MRYPAALLAR
YFHSDFTVLL PHRTLKEADG IASQLVHAID ALPSTALIDR EAFLHIGIVA YRSGQSTEQV
IDHAEQATRH ATLQGENGWY VYDSQVPEKG RGSVKWRTLL EQVLARGGPR LYQKPAVTVE
GEVHHREIMS RIYDGTQELL PSEYMPLVQQ LGLAESYDRQ HLSRILPLLA LWPEETLAFT
LSVDSLLQRT FQRWLRDSLL QCEKSHRRRI LIELAEADVC QHIDRLRPVL RLLSGLGCRL
AVSQAGLTVV STSYIKSLPV ELVKLHPGLV RSIDKRDENQ LFVQSLTGAC EGTSTQVFAA
SVRTRNEWQT LKDRGILGGQ GDFFASPEPI DAGRKKYSRR YRV
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