| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_4300 |
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| Symbol | |
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| ID | 5604408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Serratia proteamaculans 568 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009832 |
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| Strand | + |
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| Start bp | 4766903 |
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| End bp | 4768846 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640939860 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001480522 |
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| Protein GI | 157372533 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCCAC AGTGGGCCGC GGCAACAACA AAAACGCCCC AAATGCTATT GTTGGCGGTT
TCGCCGACCG ACACCAACCC CAATACTCTG AAGTGTGGAT ACCGTCTTAT GGAGCAAAAC
CCGCAGTCAC AGCTAAAGCT ACTTGTCACC CGTGGTAAGG AGCAAGGCTA TCTGACCTAT
GCTGAGGTCA ATGACCATCT GCCGGAAGAT ATCGTCGACT CCGACCAGAT CGAAGACATC
ATCCAGATGA TTAACGACAT GGGCATCCAG GTGCTGGAAG AAGCACCGGA CGCCGATGAC
CTGATGCTGG CCGAGAATAC CACCGACACC GATGATGATG CGGCGGAAGC GGCTGCTCAA
GTGTTGTCCA GCGTTGAGTC TGAAATTGGC CGTACCACCG ACCCGGTGCG CATGTACATG
CGTGAAATGG GGACCGTTGA ACTGCTGACG CGCGAAGGCG AAATCGACAT CGCCAAACGC
ATTGAAGACG GCATCAACCA GGTTCAGTGC TCGGTTGCCG AGTACCCGGA AGCCATTACC
TATTTGCTGG AGCAGTACGA TCGCGTCGAA GCGGGCGAAG CTCGCCTGTC CGATCTGATC
ACCGGCTTCG TCGATCCTAA CGCGGAAGAA GACATCGCTC CTACCGCAAC GCACGTCGGT
TCTGAGCTGT CGACCGAAGA GCAGAAAGAT GACGAAGAAG AAGACGACGA AGACGAAGAA
GAAGATGACA ACAGCATCGA TCCAGAGCTG GCTCGTCAGA AATTCGCCGA TCTGCGCGAT
CAGTATGAAG CGACTCGTGT AGTCATCAAA AAGAACGGCC GCAGCCACGC CAGCGCAGCA
GAAGAAATTC TGAAGCTGTC TGAAGTGTTC AAGCAGTTCC GCCTGGTGCC AAAACAGTTC
GACTTCCTGG TCAATAGCAT GCGCATCATG ATGGACCGCG TTCGTACTCA AGAACGTATC
ATCATGAAGC TGTGCGTTGA GCAGTGCAAA ATGCCGAAGA AAAACTTCGT TACCCTGTTC
TCCAGCAACG AAACCAGTGA TACCTGGTTC GCAGCAGCGC TGGCAATGGC CAAGCCATGG
TCAGAAAAGC TCAAAGACGT CGCGGATGAC GTGCAGCGCA GCCTGCAGAA ACTGCGTCAG
ATCGAAGAAG AGACCGGCCT GACCATCGAG CAGGTGAAGG ACATTAACCG TCGCATGTCT
ATCGGTGAAG CGAAAGCCCG CCGTGCGAAG AAAGAGATGG TTGAAGCCAA CTTGCGTCTG
GTTATTTCTA TCGCCAAGAA ATACACCAAC CGCGGTTTGC AGTTCCTGGA TCTGATCCAG
GAAGGCAACA TCGGTTTGAT GAAAGCGGTA GACAAGTTTG AATACCGCCG TGGTTATAAG
TTCTCAACTT ACGCCACCTG GTGGATCCGT CAGGCTATCA CCCGCTCTAT CGCCGACCAG
GCGCGTACCA TCCGTATTCC GGTGCATATG ATTGAGACCA TCAACAAACT CAACCGTATT
TCGCGCCAGA TGCTGCAAGA GATGGGCCGC GAACCGACGC CGGAAGAGCT GGCTGAACGC
ATGCTGATGC CGGAAGACAA AATCCGCAAA GTGCTGAAGA TCGCCAAAGA GCCGATCTCC
ATGGAAACGC CGATCGGTGA TGATGAAGAT TCACACTTGG GCGATTTCAT CGAGGATACC
ACCCTCGAGC TGCCGTTGGA TTCTGCTACT TCGGAGAGCC TGCGCTCTGC CACGCACGAC
GTTCTGGCCG GCCTGACCGC CCGTGAAGCG AAAGTGCTGC GTATGCGTTT CGGTATCGAT
ATGAATACTG ACCACACGCT GGAAGAAGTG GGCAAACAGT TCGACGTTAC CCGTGAGCGT
ATTCGTCAGA TCGAAGCCAA AGCGCTGCGT AAACTGCGTC ACCCAAGCCG TTCCGAAGTG
CTGCGTAGCT TCCTGGACGA CTAA
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| Protein sequence | MPPQWAAATT KTPQMLLLAV SPTDTNPNTL KCGYRLMEQN PQSQLKLLVT RGKEQGYLTY
AEVNDHLPED IVDSDQIEDI IQMINDMGIQ VLEEAPDADD LMLAENTTDT DDDAAEAAAQ
VLSSVESEIG RTTDPVRMYM REMGTVELLT REGEIDIAKR IEDGINQVQC SVAEYPEAIT
YLLEQYDRVE AGEARLSDLI TGFVDPNAEE DIAPTATHVG SELSTEEQKD DEEEDDEDEE
EDDNSIDPEL ARQKFADLRD QYEATRVVIK KNGRSHASAA EEILKLSEVF KQFRLVPKQF
DFLVNSMRIM MDRVRTQERI IMKLCVEQCK MPKKNFVTLF SSNETSDTWF AAALAMAKPW
SEKLKDVADD VQRSLQKLRQ IEEETGLTIE QVKDINRRMS IGEAKARRAK KEMVEANLRL
VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV DKFEYRRGYK FSTYATWWIR QAITRSIADQ
ARTIRIPVHM IETINKLNRI SRQMLQEMGR EPTPEELAER MLMPEDKIRK VLKIAKEPIS
METPIGDDED SHLGDFIEDT TLELPLDSAT SESLRSATHD VLAGLTAREA KVLRMRFGID
MNTDHTLEEV GKQFDVTRER IRQIEAKALR KLRHPSRSEV LRSFLDD
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