| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_4120 |
|---|
| Symbol | |
|---|
| ID | 5602823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | + |
|---|
| Start bp | 4576453 |
|---|
| End bp | 4577205 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640939681 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001480343 |
|---|
| Protein GI | 157372354 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.323528 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAGA AACAAACCGT CATAATTACT GGCGCGCTTA GCGGCATTGG AGAAGAATGT
GCCCGTAAGT TCAGTCAAGT GGGATATAAC GTAGTCATTT CAGGACGTAA TGAGCAAAAA
GGTCGGGAAT TAGAAACCGA ACTTCGTCAA ATGAGTCCTG ATGTTCACTT TTTTTTATCT
GATGTCGTAT TTGAGAATCA GGTTTCAGAA TTAATTAAGT ACACGCAGAA AGTCTTTGGG
AAAATTGATG TGTTGCTTAA TGTTGCTGGT ACAGAGGGGC TGCCTACCCC GCATGACAGA
ACCACCGTCG AAGACTTCCG CCATGTATTT GATACCAATG TGCTGGGAAC CCAGCTTGTG
ATGAAACATG TTCTGCCGGT TATGAGCAAA CAGGAGTCAG GCAGCCTGAT TAATTTCTCG
TCACAAGCCG GGCAAGTCGG TATTCCTGGT GGCAGCGTCT ATTCGGCAAG TAAACATGCA
GTTAACGGAT TAACGCGCTC CGCCGCACTT GAAGTTGCCG CTGACGGGGT ACGGGTTAAC
GCCATTGCGC CAGGGCCAGT AGCAACAGCA ATGTTTGACC GGTTTGTAGG AAACGATCCG
ATAGCGAAGG AACAATTTCT CAGTAAAATG CCTACCGGGC GTATCGTTAC AACCGAGGAG
ATTGCTGCAA CGGCACTATT CCTGGCTTCG GATAATGCCC GCTCTATCAT TGGCCAAATT
ATCACGGTTG ACGGTGGCTA TTCTGTAGGT TAA
|
|---|
| Protein sequence | MSKKQTVIIT GALSGIGEEC ARKFSQVGYN VVISGRNEQK GRELETELRQ MSPDVHFFLS
DVVFENQVSE LIKYTQKVFG KIDVLLNVAG TEGLPTPHDR TTVEDFRHVF DTNVLGTQLV
MKHVLPVMSK QESGSLINFS SQAGQVGIPG GSVYSASKHA VNGLTRSAAL EVAADGVRVN
AIAPGPVATA MFDRFVGNDP IAKEQFLSKM PTGRIVTTEE IAATALFLAS DNARSIIGQI
ITVDGGYSVG
|
|---|
| |