| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_3954 |
|---|
| Symbol | |
|---|
| ID | 5603718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 4380502 |
|---|
| End bp | 4382496 |
|---|
| Gene Length | 1995 bp |
|---|
| Protein Length | 664 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640939514 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_001480177 |
|---|
| Protein GI | 157372188 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCTC GTAAAGAGCT TGCCAACGCC ATCCGCGCAC TCAGCATGGA CGCCGTACAA
AAAGCAAATT CCGGCCACCC GGGTGCACCT ATGGGCATGG CGGACATCGC CGAAGTCCTG
TGGCGTGACT ACCTGAACCA CAACCCGACC AACCCGCACT GGGCTGACCG TGACCGCTTC
GTCCTCTCCA ACGGCCATGG CTCCATGCTG ATTTACAGCC TGTTGCACCT CACCGGCTAC
GACCTGCCGA TGAGCGAGCT GGAAAACTTC CGCCAGCTGC ACTCCAAAAC CCCGGGCCAC
CCGGAATACG GCTACACCCC GGGCGTGGAA ACCACCACTG GCCCACTGGG TCAGGGCATC
GCCAACGCCG TCGGTTTCGC CATTGCCGAA CGCACCCTGG GCGCGCAGTT CAACCGTCCG
GGTCATGACA TCGTCGACCA CCACACCTAC GCCTTTATGG GCGACGGCTG CATGATGGAA
GGCATCTCCC ACGAAGTCTG TTCGCTGGCC GGTACCCTCA AGCTCGGCAA ACTGACCGCG
TTCTACGATG ACAACGGCAT CTCCATCGAC GGTCACGTCG AAGGCTGGTT CACCGACAAC
ACCGCCGAGC GCTTTGAAGC CTACGGCTGG CACGTGGTGC GTCACGTTGA CGGCCACAAC
CCGGACGCCA TCAAGGCCGC CATTGAAGAA GCCCGCAAGG TCACCGACAA GCCGTCGCTG
CTGATGTGCA AAACCGTGAT TGGTTTCGGC TCCCCGAACA AGGCCGGCAC CCACGACGTG
CACGGTGCTG CGCTGGGCGC CGCCGAAGTG GCCGCCACCC GCGAAGCGCT GGGCTGGAAA
TACGCCGCCT TCGAAATCCC GCAGGACATC TATGCCCAGT GGGATGCCAA AGAAGCCGGC
AAGGCCAAAG AAGCGGCCTG GAACGACAAG TTCGCCGCCT ACGCGAAAGC CTTCCCTGAA
CTGGCTGCCG AGTTCAAACG CCGTGTGAAC GGTGAGCTGC CGGCCAACTG GAAAGCCGAA
GCCAAAGCCT TCGTGGAAAA ACTGCAGGCC AACCCGGCCA ATATCGCCAG CCGCAAGGCC
TCGCAGAACG CACTGGAAAC CTTCGGCAAG GTGCTGCCGG AATTCCTCGG CGGCTCCGCT
GACCTGGCAC CGAGCAACCT GACCATGTGG TCCGGCTCCA AGCCACTCAA CGAAGACCTG
GCGGGTAACT ACATCCACTA CGGCGTGCGC GAGTTCGGCA TGACCGCCAT CACCAACGGC
ATCGCGCTGC ACGGCGGCTT CCTGCCGTAC TCGGCGACCT TCCTGATGTT CGTGGAATAC
GCCCGTAATG CGGTGCGTAT GGCGGCGCTG ATGAAAATCC GCAACGTGTT CGTTTACACC
CATGACTCCA TCGGTCTGGG CGAAGACGGC CCGACGCACC AGCCGGTTGA GCAAATGGCC
AGCCTGCGCG TGACCCCGAA CATGAGCACC TGGCGTCCGT GTGACCAGGT GGAGTCGGCG
GTAGCCTGGC AGTACGGCAT CGAGCGCAAC GACGGCCCGA CCACGCTGAT TTTCTCACGT
CAGAACCTGA CCCAGCAGCC GCGTACCGCA GAGCAACTGG CCAACGTTTA CCGTGGTGGT
TATGTGCTGA AGGACTGCGC CGGGACGCCG GACGTCATTC TGATTGCCAC CGGTTCGGAA
GTGGGTATCA CCGTGGAAGC GGCAGACCAG CTGACTGCGG CCGGCCGTAA GGTGCGCGTG
GTCTCCATGC CGTCTACCGA CGCGTTCGAC AAGCAGGATG CGGCCTACCG TGAATCCGTG
CTGCCGGCGG CAGTGAGCGC ACGCGTGGCG GTAGAAGCGG GTATCGCGGA CTACTGGTAC
AAGTATGTTG GCCTGAACGG CGCCATCGTG GGTATGACCA CCTTTGGTGA GTCAGCCCCG
GCAGAGCAGC TGTTCAAAGA GTTTGGCTTC ACCGTGGACA ACGTGGTGGC CAAGGCGCAG
GCACTGCTGA AATAA
|
|---|
| Protein sequence | MSSRKELANA IRALSMDAVQ KANSGHPGAP MGMADIAEVL WRDYLNHNPT NPHWADRDRF
VLSNGHGSML IYSLLHLTGY DLPMSELENF RQLHSKTPGH PEYGYTPGVE TTTGPLGQGI
ANAVGFAIAE RTLGAQFNRP GHDIVDHHTY AFMGDGCMME GISHEVCSLA GTLKLGKLTA
FYDDNGISID GHVEGWFTDN TAERFEAYGW HVVRHVDGHN PDAIKAAIEE ARKVTDKPSL
LMCKTVIGFG SPNKAGTHDV HGAALGAAEV AATREALGWK YAAFEIPQDI YAQWDAKEAG
KAKEAAWNDK FAAYAKAFPE LAAEFKRRVN GELPANWKAE AKAFVEKLQA NPANIASRKA
SQNALETFGK VLPEFLGGSA DLAPSNLTMW SGSKPLNEDL AGNYIHYGVR EFGMTAITNG
IALHGGFLPY SATFLMFVEY ARNAVRMAAL MKIRNVFVYT HDSIGLGEDG PTHQPVEQMA
SLRVTPNMST WRPCDQVESA VAWQYGIERN DGPTTLIFSR QNLTQQPRTA EQLANVYRGG
YVLKDCAGTP DVILIATGSE VGITVEAADQ LTAAGRKVRV VSMPSTDAFD KQDAAYRESV
LPAAVSARVA VEAGIADYWY KYVGLNGAIV GMTTFGESAP AEQLFKEFGF TVDNVVAKAQ
ALLK
|
|---|
| |