Gene Spro_3813 details

Gene Information

• Locus tag: Spro_3813
• Symbol: recD
• ID: 5606904
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Serratia proteamaculans 568
• Kingdom: Bacteria
• Replicon accession: NC_009832
• Strand: -
• Start bp: 4214035
• End bp: 4215900
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 640939373
• Product: exonuclease V subunit alpha
• Protein accession: YP_001480037
• Protein GI: 157372048
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
• TIGRFAM ID: [TIGR01447] exodeoxyribonuclease V, alpha subunit

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.752384
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 7
• Fosmid unclonability p-value: 0.00686322
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGATCGCTC TACTGGAACA GGCGCAAGCG CTTGGCGTGT TACGTCCACT AGATTTGCAG 
TTCGCCAGCG TAGTCGCTGG AGCGGATGAG CCTGAGATAC TGTTGGCTGC CGCCTGCCTC 
AGTGCGGAGG CTGGCGCGGG TCACGTTTGC CTGATGCTGG AGCAACTGCT GCCGGAAAAC 
CTATTTGACG GACGTCAGCC GGAGCTGGCG CAGGCCGTGT GGTTGGCGGC AGGGCAGTTG 
GATGTGGCCG GTTGGCAACG GCGGCTGTCG GCCAGTGCGG CGGTGAGCGA CGGCAGCACT 
GCGACGCCGA TGGTGTTACA ACCACAGCGC TTGTATCTGC AGCGCATGTG GCAGAACGAG 
GGGGAGGTTG CCGCCTTTAT CCGTGGTGAC AGTATCAGCA GCGACAGTCT GCCTCAGGCG 
GTTGAAGAGG CCGACCTGCG CACCATTCTC GACCAATTAT TTGGTGAGGC GACCGATGAA 
CCCGACTGGC AAAAAATTGC TGCCGCGGTG GCCGCTACGC GACGTATTGC AGTGATTTCG 
GGCGGACCGG GCACCGGTAA GACCACCACG GTCGCCAAAT TGTTGGCGGC GCTGGTGCAG 
CTCGATGAAG GGCGACGTTT ACGCATCCAA CTGGCGGCGC CTACCGGTAA AGCGGCGGCG 
CGTTTAACCG AATCGTTAGG CAGTGCCGGC AAACAATTGG CGCTAACCCC GGAGCAGCGT 
GCGTTGTTCC CTACCGAGGC CTCCACGTTG CATCGCCTGC TGGGCGCTCA GCCCAACAGT 
CAGCGTATGC GTTATCACAG TGGCAACCGG CTGCATCTGG ACGTGCTGGT AGTTGATGAG 
GCCTCTATGG TCGACCTGCC TATGATGGCG CGTTTGATTG CCGCCTTGCC CACTCAGGCA 
CGGGTGATCT TCCTGGGCGA TCGCGATCAA CTGGCTTCGG TGGAGGCCGG GGCGGTACTG 
GGAGATATTT GCCGCTTTGC CGAACAAGGT TACAGCGTGG CGCGGGCGGA GCAACTTTCG 
CGGCTGACCG GCTGCCGGCT ACAGGGGCAA ACTGCCCAGG CGGAAGCTGC GGTGCGCGAC 
AGTCTGTGCC TGCTGCGTAA AAGCTACCGT TTTGATGCCA ATTCGGGTAT TGGTCAATTG 
GCCTTTGCCG TGAACGCCGG TGATGGCAAG CGGGCAATGG CGGCGCTCAG CGGCAGTTTC 
GCTGACGTTA GCGGTTATCC ACTGGCGGAA ACGCAGGACT ATCAGGCGTT GTTGGATGCC 
TGCGTGGCGG GTTACCGTGA TTATCTGCGG CTGGTGGGTG AAGGGGCGGA CGCAGTGGCG 
GTGTTGGCGG CGTTCGGTCA TTTCCAGGTG CTGTGCGCGC TGCGCGAGGG GCCTTTCGGC 
ATCGCCGGGT TAAATGACCG CATTGAGACG GGGCTGCAAC GTGCCGGTCT AATCCAGCGT 
AAGCCGGGAG CCGCTGGGCG TTGGTATTCC GGCCGTCCGG TGATGATTGG TCGCAATGAC 
AGCGCTCTGG GGCTGTTTAA CGGCGATATT GGCATTGCCT TGCGGGACGA GAGCGGCGAA 
CTACGTGTTC ACTTTCAACT GCCGGACGGC AGCATCAAGT CGGTGCAGCC GAGCCGTTTA 
CCGGCGCATG AAACCGCTTA TGCGATGACG GTGCATAAAT CACAAGGCTC GGAGTTTGAC 
CATACGGTAC TGGTGTTGCC CAATCATTTC CTGCCGGTGC TGACCCGTGA ACTGGTGTAC 
ACCGCGATCA CCCGCGCTCG CAGGCAGCTT TCGCTGTACG CCATCGATGC GGTTTTGATG 
CGGGCGATCC GCACTCCGAC CCAGCGCCGT AGCGGATTGG CGGAGCGGTT GCAGCTCAAG 
GCTTAA 

 

Protein sequence

MIALLEQAQA LGVLRPLDLQ FASVVAGADE PEILLAAACL SAEAGAGHVC LMLEQLLPEN 
LFDGRQPELA QAVWLAAGQL DVAGWQRRLS ASAAVSDGST ATPMVLQPQR LYLQRMWQNE 
GEVAAFIRGD SISSDSLPQA VEEADLRTIL DQLFGEATDE PDWQKIAAAV AATRRIAVIS 
GGPGTGKTTT VAKLLAALVQ LDEGRRLRIQ LAAPTGKAAA RLTESLGSAG KQLALTPEQR 
ALFPTEASTL HRLLGAQPNS QRMRYHSGNR LHLDVLVVDE ASMVDLPMMA RLIAALPTQA 
RVIFLGDRDQ LASVEAGAVL GDICRFAEQG YSVARAEQLS RLTGCRLQGQ TAQAEAAVRD 
SLCLLRKSYR FDANSGIGQL AFAVNAGDGK RAMAALSGSF ADVSGYPLAE TQDYQALLDA 
CVAGYRDYLR LVGEGADAVA VLAAFGHFQV LCALREGPFG IAGLNDRIET GLQRAGLIQR 
KPGAAGRWYS GRPVMIGRND SALGLFNGDI GIALRDESGE LRVHFQLPDG SIKSVQPSRL 
PAHETAYAMT VHKSQGSEFD HTVLVLPNHF LPVLTRELVY TAITRARRQL SLYAIDAVLM 
RAIRTPTQRR SGLAERLQLK A