Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spro_3793 |
Symbol | dapD |
ID | 5607173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Serratia proteamaculans 568 |
Kingdom | Bacteria |
Replicon accession | NC_009832 |
Strand | + |
Start bp | 4194637 |
End bp | 4195461 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640939350 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_001480017 |
Protein GI | 157372028 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000408284 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAGCAAT TACAAAACGT TATTGAAAAC GCCTTCGAAC GCCGTGCGGA AATCACCCCG GCGAACGCAG ACACCGTAAC GCGCGAAGCG GTAAACCAGG TGATCGCCCT GCTGGACAGC GGCGCCCTGC GCGTTGCCGA GAAGATTGAC GGTCAGTGGG TAACGCATCA GTGGCTGAAA AAGGCCGTGC TGCTTTCTTT CCGCATCAAT GACAACAAAG TGATGGACGG TGCCGAAACC CGTTATTACG ACAAAGTGCC AATGAAATTC GCCGATTACG ACGAAGCGCG CTTCCAGAAA GAAGGCTTCC GCGTGGTGCC ACCAGCCACC GTTCGCCAGG GCGCGTTCAT CGCCCGTAAT ACCGTACTGA TGCCATCCTA CGTGAACATC GGTGCCTACG TTGACGAAGG CAGCATGGTG GATACCTGGG CAACCGTCGG CTCTTGCGCG CAGATCGGCA AAAACGTTCA CCTGTCCGGC GGCGTCGGCA TCGGTGGCGT ACTGGAGCCA CTGCAGGCCA ACCCGACCAT CATTGAAGAC AACTGCTTTA TCGGTGCGCG TTCAGAAGTG GTTGAAGGCG TGATCGTGGA AGAAGGTTCA GTGATCTCCA TGGGCGTGTA CCTGGGCCAG AGCACCCGCA TTTACGACCG TGAAACCGGC GAAGTGCACT ACGGCCGCGT ACCGGCCGGT TCGGTAGTGG TTTCCGGTAA CCTGCCGTCC AAAGATGGCT CTTACAGCCT GTATTGCGCG GTCATCGTCA AGAAAGTCGA TGCCAAGACG CGTGGTAAAG TCGGCATTAA TGAGTTATTA CGCACCATCG ACTAA
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Protein sequence | MQQLQNVIEN AFERRAEITP ANADTVTREA VNQVIALLDS GALRVAEKID GQWVTHQWLK KAVLLSFRIN DNKVMDGAET RYYDKVPMKF ADYDEARFQK EGFRVVPPAT VRQGAFIARN TVLMPSYVNI GAYVDEGSMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQANPTIIED NCFIGARSEV VEGVIVEEGS VISMGVYLGQ STRIYDRETG EVHYGRVPAG SVVVSGNLPS KDGSYSLYCA VIVKKVDAKT RGKVGINELL RTID
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