| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_3574 |
|---|
| Symbol | srlR |
|---|
| ID | 5605543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | + |
|---|
| Start bp | 3950445 |
|---|
| End bp | 3951218 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640939125 |
|---|
| Product | DNA-bindng transcriptional repressor SrlR |
|---|
| Protein accession | YP_001479798 |
|---|
| Protein GI | 157371809 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.333034 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAA AGCAGCGACA GGCCGCTATC CTTGAATATC TGCAGCGACA TGGCAAAACG
GCAGTGGATG CCCTGGCGGT ACATTTCGCC ACCACCGGCA CCACCATACG TAAAGATCTC
ACCCTCTTGG AAGACGAAGG CGAGGTGATC CGCACCTACG GCGGCGTAGT GCTCAGCCGC
GACGATGGCG ACCAGCCCAT CGACCGAAAA ACGCATATCA ATACCGAAAA GAAACGCCAG
ATCGCCTACG CCGCCATCAA GTTGATCAAC GACGGTGATT CGCTGATATT CGATGCCGGC
AGTACGGTAC TGCAAATGGT CCCGCATCTG GCGCAGTTCA ATAACATCAC GGTAATGACC
AACAGCCTGC ACATCGTCAA TGCGCTGGTG GAGCTGGATA ACGACCAGAC CATCCTGATG
CCCGGCGGCA CTTATCGCAA AAAATCGGCG TCCTTCCACG GCAGTCTGGC GGAGTCTGCT
TTCCAGCAAT TCAGCTTTGA TAAGCTGTTT ATCGGCGCAG ACGGCGTGGA TCTCAATGCC
GGTGTCACCA CCTTTAACGA AGTGCATAAC GTCAGCAAGG CGATGTGCGA AGCCGCCAGC
CGCATTATCC TGCTGGTGGA CTCGTCAAAA TTCGGCCGCA AAAGCCCCAA TGTGGTTTGC
GATCTGAGCG CCGTCGATAC GCTGATCACC GATAAAAACA TCAACCCGGA TTATCTCGCC
GCGCTGCAAG CGAAAGGCAT CAATATCCTT CTGGTAGGAG ATTCTGATGA GTAA
|
|---|
| Protein sequence | MKPKQRQAAI LEYLQRHGKT AVDALAVHFA TTGTTIRKDL TLLEDEGEVI RTYGGVVLSR
DDGDQPIDRK THINTEKKRQ IAYAAIKLIN DGDSLIFDAG STVLQMVPHL AQFNNITVMT
NSLHIVNALV ELDNDQTILM PGGTYRKKSA SFHGSLAESA FQQFSFDKLF IGADGVDLNA
GVTTFNEVHN VSKAMCEAAS RIILLVDSSK FGRKSPNVVC DLSAVDTLIT DKNINPDYLA
ALQAKGINIL LVGDSDE
|
|---|
| |