| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_3444 |
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| Symbol | ligA |
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| ID | 5604610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Serratia proteamaculans 568 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009832 |
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| Strand | - |
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| Start bp | 3813527 |
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| End bp | 3815548 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640938997 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_001479670 |
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| Protein GI | 157371681 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000441921 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000209829 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAATCGA TAATCCAACA AATCAATCAA CTACGAACCT CACTGCGCCA TCACGAATAT
CAATACCATG TGCTGGACGC GCCGGAAGTA CCGGATGCGG AATACGACCG CCTGATGGGT
GAACTGCGTG CCCTGGAAAG CGCACATCCG GAGCTGATCA CCGCCGATTC TCCGACCCAG
CGCGTGGGTG CCGCCCCGCT GGCGGCGTTC GATCAGGTGC GTCATGAAGT GCCTATGTTG
TCACTGGACA ACGTTTTCGA CGAAGAAAGC TTCCTGGCAT TCTACAAACG AGTGCAGGAT
CGCCTGAAGA GCAGCGATCC GCTGACCTTC TGCTGTGAGC TGAAGCTGGA CGGTCTGGCG
GTCAGCCTGC TGTACGAAGA TGGCGAACTG GTTCGCGCGG CTACCCGTGG CGACGGCACC
ACCGGTGAAA ACATTACCTC TAACGTGCGC ACCATCCGCG CCATTCCACT GCGATTGACA
GGTGACAATA TCCCGCGCCG GCTGGAAGTG CGTGGCGAAG TGTTTATGCC GCAGGCCGGT
TTCGAGCAGA TGAACGAAGA GGCGCGTCGC AAGGACGGCA AGATCTTCGC CAATCCGCGT
AACGCTGCCG CCGGTTCGAT TCGTCAGCTC GACCCGCGTA TTACCGCCAA ACGCCCACTG
ACCTTTTTCT GTTATGGCGT TGGCCTGCTG GAAGGCGGCG AATTGCCTCG CAGCCACTGG
CAGCGCCTGA TGCAGTTCAA AGACTGGGGG TTACCGGTCA GCGATCGCGC CAAACGTTGT
ACCGGCAGCG ACGAAGTGCT GGCGTTCTAC CGCCAGGTGG AGCAGGACCG CACGCAACTT
GGGTTTGATA TCGACGGCGT GGTAGTGAAA ATCGACGATA TTGACCTGCA GGAAACGCTG
GGCTTTGTGG CGCGTGCGCC GCGCTGGGCG ACGGCATTCA AATTCCCGGC GCAGGAGCAG
ATTACCCAGG TGCGCGAGGT GGAATTCCAG GTTGGCCGTA CCGGTGCGAT CACGCCGGTG
GCAAGACTGG AGCCCGTGCT GGTTGCCGGG GTGATCGTCA GCAACGCCAC GCTGCATAAC
GCCGATGAAA TTGAACGTTT GGGCCTGCGC ATCGGCGATA CGGTGATTGT GCGCCGTGCC
GGCGACGTGA TCCCGCAGGT GGTGGGAGTG ATAGCCGAAC GTCGTCCAGC GGACGCGCGT
GAAATTTTGT TCCCGCAGCA TTGTCCGGTA TGCGGTTCCG ACGTTGAGAG AGTGGAAGGC
GAAGCGGTGG CACGTTGCAC CGGCGGGCTG ATCTGCGCTG CACAACGCAA AGAAGCGCTG
AAGCACTTTG TTTCCCGTCG GGCGTTGGAC GTCGACGGCA TGGGCGACAA AATCATCGAG
CAGTTGGTGG AAAAAGAGTA TGTGAAGAAT CCGGCCGATC TGTTCCGTCT GTCCGCCGGC
ATTCTGACCG GGCTGGATCG CATGGGGCCG AAATCGGCGC AGAATCTGGT CAACGCGCTG
GAAAAATCCA AGCAGACCAC CTTTGCCCGT TTCCTGTATG CGCTTGGCAT CCGTGAAGTC
GGCGAAGCCA CAGCGGCCAA TCTGGCTGCA CACTTCGGTA CGCTGGATAA ACTGTTAGCC
GCTGATATCG AGGCGTTGAA AGAAGTGCCC GAGGTCGGTG AAATCGTGGC GAAGCACACG
CGTCATTTCC TTGACGAAGA GCTCAACCAA CAGGTTATCC AGGAACTGGT TAGTGACGAA
ATCGGCATTA ACTGGCCGGC CCCGGTGGTG ATAGTAGCGG AAGAGATCGA CAGCCCGTTT
GCCGGCAAAA CCGTGGTGCT GACCGGCTCG TTGAGCCAGC TATCACGTGA CGAGGCCAAA
GATCGTCTGA CGGCGCTGGG CGCCAAGGTC AGTGGCAGCG TATCGAAGAA AACCGATCTG
GTGATTGCAG GTGAAGCCGC CGGTTCCAAA CTGGTGAAGG CGCAGGAACT GGGCATTGAG
GTCATTGACG AAGCGGAAAT GATCCGCCTG CTGGGGGCCT GA
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| Protein sequence | MESIIQQINQ LRTSLRHHEY QYHVLDAPEV PDAEYDRLMG ELRALESAHP ELITADSPTQ
RVGAAPLAAF DQVRHEVPML SLDNVFDEES FLAFYKRVQD RLKSSDPLTF CCELKLDGLA
VSLLYEDGEL VRAATRGDGT TGENITSNVR TIRAIPLRLT GDNIPRRLEV RGEVFMPQAG
FEQMNEEARR KDGKIFANPR NAAAGSIRQL DPRITAKRPL TFFCYGVGLL EGGELPRSHW
QRLMQFKDWG LPVSDRAKRC TGSDEVLAFY RQVEQDRTQL GFDIDGVVVK IDDIDLQETL
GFVARAPRWA TAFKFPAQEQ ITQVREVEFQ VGRTGAITPV ARLEPVLVAG VIVSNATLHN
ADEIERLGLR IGDTVIVRRA GDVIPQVVGV IAERRPADAR EILFPQHCPV CGSDVERVEG
EAVARCTGGL ICAAQRKEAL KHFVSRRALD VDGMGDKIIE QLVEKEYVKN PADLFRLSAG
ILTGLDRMGP KSAQNLVNAL EKSKQTTFAR FLYALGIREV GEATAANLAA HFGTLDKLLA
ADIEALKEVP EVGEIVAKHT RHFLDEELNQ QVIQELVSDE IGINWPAPVV IVAEEIDSPF
AGKTVVLTGS LSQLSRDEAK DRLTALGAKV SGSVSKKTDL VIAGEAAGSK LVKAQELGIE
VIDEAEMIRL LGA
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