| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_2657 |
|---|
| Symbol | |
|---|
| ID | 5605703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 2926204 |
|---|
| End bp | 2928801 |
|---|
| Gene Length | 2598 bp |
|---|
| Protein Length | 865 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640938196 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_001478886 |
|---|
| Protein GI | 157370897 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000104499 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000870588 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAAAG CTCTCGTAAT AGTTGAGTCC CCGGCAAAAG CCAAAACTAT TAATAAATAT
TTAGGTAATG ACTACGTGGT GAAGTCCAGC GTCGGTCATA TCCGTGATTT GCCGACCAGT
GGCTCAGCCA GCAAAAAGAG CGCTGACTCA ACCGAAGACA AAGCCAAGAA GAAAGTTAAA
AAAGATCCAA CGACGGCGCT GGTAAATCGT ATGGGCGTCG ATCCCTACCA TGGCTGGAAA
GCGCATTACG AAATCCTGCC GGGTAAAGAA AAAGTTGTTG CCGAGTTAAA GTCGTTAGCG
GAAAACGCCG ACCACATTTA TCTCGCAACC GACCTTGACC GCGAAGGGGA AGCCATTGCC
TGGCACCTGC GGGAAGTTAT CGGTGGTGAC GACAAACGCT TTAGCCGCGT GGTGTTTAAC
GAAATTACCA AGAACGCGAT CCAAAACGCG TTCAAACAGC CCGGCGAACT GAATATCGAC
CGTGTCAACG CACAGCAGGC GCGTCGCTTT ATGGACCGCG TGGTGGGTTA CATGGTCTCG
CCACTGCTAT GGAAAAAAAT TGCCCGTGGC TTGTCCGCTG GGCGAGTGCA ATCCGTTGCG
GTTCGACTGG TGGTGGAGCG TGAGCGCGAC ATCAAAGCCT TCGTGCCGGA AGAATACTGG
GAGTTGCACG CCGATCTGTT GGCGAAGGGT GATACCGCGC TGCAGATGGA AGTGACCCAT
GCCCACGACA AACCCTTCAA ACCGGTTAAC CGTGAGCAGA CTCACGCCGC ACTCAACGTG
CTGGAAAAAG CCCGTTATAC GGTACTGGAT CGCGAAGACA AGCCGACCAG CAGCAAGCCG
GGCGCACCTT ATATTACTTC TACGTTGCAG CAGGCGGCCA GTACCCGTCT GAGCTTTGGC
GTGAAGAAAA CCATGATGAT GGCTCAGCGC CTGTATGAAG CCGGTCACAT CACCTATATG
CGTACCGACT CCACCAACCT GAGCCAGGAT GCGCTCGAGA TGGTGCGTGG CTACATCGGT
GACAACTTCG GCGACAAGTA CCTGCCGAAA GCGCCGAACC AGTACAGCAG CAAAGAAAAC
TCGCAGGAAG CACACGAAGC CATCCGTCCG TCGGATGTCA ACGTGCTGGC CGAGCAGTTG
AAAGATATGG AAGCGGATGC GCAAAAACTG TATCAGCTGA TTTGGCGCCA GTTTGTGGCC
TGTCAGATGA CACCGGCGCA GTACGACTCC ACCACGCTGT CGGTGAAGGC CGCTGATTAC
CAGCTGCGCG CCAAAGGCCG TACGCTGCGT TTCGATGGCT GGACCAAAGT GATGCCTGCT
CTGCGTAAGG GTGATGAAGA CCGCACCTTG CCGTATGTTG AAGTAGGTAG CGATCTGGAA
CTGCAGAAAC TGATCCCAAG CCAGCACTTT ACCAAACCGC CGGCGCGTTA TAGCGAAGCG
TCATTGGTAA AAGAGTTGGA AAAACGGGGT ATCGGCCGTC CTTCAACCTA CGCTTCGATC
ATTTCCACCA TTCAGGATCG TGGTTATGTG CGAGTCGAAA GCCGCCGTTT CTACGCTGAG
AAAATGGGTG AGATCGTTAC CGACCGCCTG GAAGAAAACT TCCGCGAGCT GATGAACTAT
GACTTCACCG CACGCATGGA AAACGGTCTG GACCAGGTAG CCAACAACCA GGCCGAGTGG
AAAGCGGTGC TGGATGAGTT CTTTGCCGAG TTCAGCGAAC AGCTGGAAAC GGCGGAGAAA
GAGCCGGAAG AAGGCGGTAT GCGCCCGAAT CAGATGGTGA TGACCAGTAT CGATTGCCCA
ACCTGCGGTC GCAAGATGGG TATCCGTACT GCCAGCACCG GCGTTTTCCT GGGTTGCTCC
GGCTATGCAT TGCCGCCGAA GGAACGTTGT AAAACCACCA TTAACCTGGT GCCGGAAACG
GAAGTGCTCA ACATTCTCGA AGGGGATGAC GCGGAAACCA ACGCGTTGCG TGCCCGCCGT
CGCTGCCAGA AATGCGGCAC GGCGATGGAC AGCTACCTGA TCGATAACCA GCGCAAGCTG
CACGTGTGCG GTAACAACCC GGCGTGTGAC GGCTATGAGA TTGAAGAGGG TGAGTTCCGC
CTGAAAGGGT ACGACGGCCC TGTGGTTGAG TGCGATAAGT GTGGTTCTGA AATGCACCTG
AAAATGGGGC GCTTCGGTAA GTACATGGGT TGCACCAACG AGAGCTGCAA AAATACCCGT
AAGATCCTGC GTAATGGTGA TGTTGCACCG CCGAAGGAAG ATCCGGTTCC ATTGCCGGAG
CTGCCATGCG AAAAGTCGGA CGCTTACTTT GTTCTGCGTG ACGGCGCTGC CGGTGTGTTC
CTGGCGGCCA ATACCTTCCC TAAATCGCGC GAAACCCGTG CGCCGTTGGT GGAAGAGTTG
GCCCGCTTCA AGGACCGTCT GCCTGAAAAA CTGCGTTATC TGGCGGATGC GCCGGTGGCC
GATGCGGAAG GCAACAAAAC GCTGGTGCGT TTCAGCCGCA AGACCAAGCA GCAGTATGTC
TCGGCAGAGA AAGACGGCAA AGCCACTGGT TGGTCTGCTT TCTACATCGA TGGCAAATGG
GTTGAAGGCA AAAAATAA
|
|---|
| Protein sequence | MGKALVIVES PAKAKTINKY LGNDYVVKSS VGHIRDLPTS GSASKKSADS TEDKAKKKVK
KDPTTALVNR MGVDPYHGWK AHYEILPGKE KVVAELKSLA ENADHIYLAT DLDREGEAIA
WHLREVIGGD DKRFSRVVFN EITKNAIQNA FKQPGELNID RVNAQQARRF MDRVVGYMVS
PLLWKKIARG LSAGRVQSVA VRLVVERERD IKAFVPEEYW ELHADLLAKG DTALQMEVTH
AHDKPFKPVN REQTHAALNV LEKARYTVLD REDKPTSSKP GAPYITSTLQ QAASTRLSFG
VKKTMMMAQR LYEAGHITYM RTDSTNLSQD ALEMVRGYIG DNFGDKYLPK APNQYSSKEN
SQEAHEAIRP SDVNVLAEQL KDMEADAQKL YQLIWRQFVA CQMTPAQYDS TTLSVKAADY
QLRAKGRTLR FDGWTKVMPA LRKGDEDRTL PYVEVGSDLE LQKLIPSQHF TKPPARYSEA
SLVKELEKRG IGRPSTYASI ISTIQDRGYV RVESRRFYAE KMGEIVTDRL EENFRELMNY
DFTARMENGL DQVANNQAEW KAVLDEFFAE FSEQLETAEK EPEEGGMRPN QMVMTSIDCP
TCGRKMGIRT ASTGVFLGCS GYALPPKERC KTTINLVPET EVLNILEGDD AETNALRARR
RCQKCGTAMD SYLIDNQRKL HVCGNNPACD GYEIEEGEFR LKGYDGPVVE CDKCGSEMHL
KMGRFGKYMG CTNESCKNTR KILRNGDVAP PKEDPVPLPE LPCEKSDAYF VLRDGAAGVF
LAANTFPKSR ETRAPLVEEL ARFKDRLPEK LRYLADAPVA DAEGNKTLVR FSRKTKQQYV
SAEKDGKATG WSAFYIDGKW VEGKK
|
|---|
| |