| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_2611 |
|---|
| Symbol | |
|---|
| ID | 5604990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 2874315 |
|---|
| End bp | 2875949 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640938150 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001478840 |
|---|
| Protein GI | 157370851 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.502409 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGAA AAAAAATTCA ACAGGGTTTT CGTTTGGCGC TGTGTGCCGT GGCGATTGGC
GCAGGGCTGA GCAGCGCCAT GGCGGCTCAG GTTCCCCCAG GTACTACGCT GGCGGAGAAA
CAGGAAATAG TTCGCCATAT CAAAGATGAG CCGGCCTCAC TCGATCCCAT TAAAGCGGTT
GGCCTGCCGG AAGCACAATT GGCGCGCGAT CTGTTTGAAG GGCTGGTGAA CCAGGATGCC
AACGGCAAGG TGATCCCCGG CGTCGCAACC CGCTGGCAAA CCACCGATAA CCAAACCTAT
ATTTTCACCC TGCGTAAAGA TGCGCGCTGG TCTAACGGTG ACCCTGTCAC GGCGAAAGAC
TTCGTTTACA GTTGGCAGCG GCTGGTTGAG CCGAAGAACT TGTCACCTTT TGCCTGGTTT
GCCCAGTTGG CCGGCATCCA AAACGCCGAT GAGATCATTA CCGGCAAGCT GCCTGCCGAT
AAGCTGGGCG TCACCGCGCT GGATGATTAC ACCTTCAAAG TGCAGTTGAA CAAACCGGTG
CCGTATTTTG TCAGCCTGAC GGCCAACTTC AGCCTGTTCC CGGTCAACAA GGCGGTGGTA
GAGAAATTTG GCAACGACTG GACCAAAGTC GGCAACCTGG TCGGTAACGG CGCGTTTAAA
CTGCAGGAAC GGGTAGTTAA CGAGAAACTG GTACTGACGC CAAACGATCA CTATTGGGAT
CATGCGCATA CGGTGTTGAC CAAAGTGACC TTTGTGCCGA TCAACCAGGA ATCCAACGCC
ACCAAGCGTT ATCTGGCCGG CGATATCGAT ATCACCGAGT CCTTCCCGAA AAACATGTAC
CAAAAACTGC TGAAAGACAT CCCAAACCAG GTCTATACCC CGGATCAGCT CGGCACCTAT
TATTATGCTT TTAATACCCA ACGTGCGCCG ACTAACGATG TGCGGGTGCG CAAGGCATTG
TCTTACGCTA TCGATCGCAA GATTATCGCC GAAAAAGTGT TGGGGACCGG TGAAAAACCG
GCTTACCACT TCACCCCGGA TGTCACCGCC GGGTTTAAGC CGGAAGTGAG CCTGTTGCAA
CAGCAACCAC AGGCCGAACT GGACGCCCAG GCCAAGGCGT TGATGCAGGC GGCAGGTTAT
GGCCCGAACA ATCCGCTGAA ACTGACGCTG TTGTACAACA CTTCGGAAAG CCATCAGAAA
ATTGCGATTG CCGTGGCTTC AATGTGGAAG AAAACGCTCG GTATTGACGT CAAGTTGCAA
AATCAGGAAT GGAAAACCTA TATCGATAGC CGTAACACCG GCAATTTCGA CGTGGTGCGC
GCTTCGTGGG TCGGCGATTA CAATGAAGCC TCGACCTTCC TGTCGCTGTT AAGCTCAACC
CACAGCGGAA ATATCGCTAA ATTCAAAAGT GCGGATTACG ACAAACTGCT CGCGCAGGCC
AGCCGAGAAA CCAGTCCGGC AGCCTTGACC ACTGACTACA ACAAACTTGA GCAGATCATC
GCCGAACAGG CACCGATTGC GCCAATTTAT CAGTATACCA ATGGCCGATT GATCAAACCC
TGGGTGAAAG GCTACCCGAT CACCAATCCG GAAGACGTGG CGTACAGCCA GACGATGTAT
ATTTTGAAGC ATTGA
|
|---|
| Protein sequence | MTRKKIQQGF RLALCAVAIG AGLSSAMAAQ VPPGTTLAEK QEIVRHIKDE PASLDPIKAV
GLPEAQLARD LFEGLVNQDA NGKVIPGVAT RWQTTDNQTY IFTLRKDARW SNGDPVTAKD
FVYSWQRLVE PKNLSPFAWF AQLAGIQNAD EIITGKLPAD KLGVTALDDY TFKVQLNKPV
PYFVSLTANF SLFPVNKAVV EKFGNDWTKV GNLVGNGAFK LQERVVNEKL VLTPNDHYWD
HAHTVLTKVT FVPINQESNA TKRYLAGDID ITESFPKNMY QKLLKDIPNQ VYTPDQLGTY
YYAFNTQRAP TNDVRVRKAL SYAIDRKIIA EKVLGTGEKP AYHFTPDVTA GFKPEVSLLQ
QQPQAELDAQ AKALMQAAGY GPNNPLKLTL LYNTSESHQK IAIAVASMWK KTLGIDVKLQ
NQEWKTYIDS RNTGNFDVVR ASWVGDYNEA STFLSLLSST HSGNIAKFKS ADYDKLLAQA
SRETSPAALT TDYNKLEQII AEQAPIAPIY QYTNGRLIKP WVKGYPITNP EDVAYSQTMY
ILKH
|
|---|
| |