| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_2518 |
|---|
| Symbol | |
|---|
| ID | 5603865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 2764041 |
|---|
| End bp | 2765543 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640938057 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001478747 |
|---|
| Protein GI | 157370758 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.784165 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCCA TCATGCAGGT CGAATTTTAT CCGTATTCTT CGCAAGCTTC TGGAAGCAAG
ATGCACACCA CTGAGTTACC CGACGCCACT AAATTGCGCC TCGCGCTAAT CGTCTTTTTG
CTGGTGTTCT GCACCTGCAT TTTGGGTATT GAAAGTCGTC CCATCGGTCT GTTAGCGCTA
TTTTGGCCAA CCAATGCGGT ACTTTTGGCC GTGCTGGTAC GCTACCCGGC CATGGGCAGT
CCTGTTGGCT GGTTGATGGC GATGTCAGGC TATTTGGCGG CGGATCTGAT CACCGGCAGC
CCTCTGGGCA AAGCCATACT GCTCAATGGT GCCAATATTG CCGGTGTGGC GGTCGGGTTT
TATCTGTTTA TGCGTTTATC GCCGCAGGTC AGAACCCTGG AACGCACCTC ATCGAGCATT
TATCTGTTCG CTATCTGTCT GGCGAGCGCG ACAGCTACGG CGTTACTTGG TGCCGGGGCT
TCGGTGCTGC TGTTTGGCCG CCAGTATCTG CCTTCATTGG CGTTGTGGCT GTCTTCGGAA
TTTACCAACT ACATCACGCT GATGCCGTTT ATTCTGGCTT TTCCGCGGGA CTGGAAAGGT
TATCTTCGCA GCATTTTCCA GGCCGTGACC CTGCGCAGCC AGTGGCCCAA TACCGTCAGA
AAAATCGCGG TGTTACTTCT GCTGCTGTTG GCCTGCTTCG GTAGCATCCT GATTGGTGGC
CCCGGAGCGG TGATTTTCCC GATGCCGATC CTGCTATGGT TGGCGATGTC GTTCTCGCTG
TTCAGCACAA TGATCGCGGT ATTGGTTTAT GTGTTGTGGT GCCACCTGGC GATCGATCTG
GGCCTGATTA CCACTAACCT TGATATGAAA ATGCTGCAAA ACACGGTGTC GATGCGACTT
GGCGTGGCGT TACTGGCGCT GGGACCTATT GCCGTGGCCA GCATGAATTT TGCTCGCAAT
GCGCTGCTGC AAAGGCTTGA GCACGTGGCG AATCATGATG CTCTGACCCA TGTATTGACC
CGCAGCGCTT TTATGCAGCG CGGAACGCGG CTGGTCAGCC AAAAGGGCGA GCGGATCTGC
ATCATGATGC TGGATATCGA CTACTTTAAA TCGATCAATG ACCGCTTTGG GCACGCCGGC
GGCGATGCGG CGCTGCTGTC CTTTACCCGC GCCATTACTG GCGATCTGCG CGATAACGAT
TTGTTTGGTC GCATGGGGGG TGAAGAATTT GCGATTGTCG CACCCATTGC GCAACAGCAG
GATGCGCTAT CGCTGGCCGA ACGTCTGCGT CACCGAGTTG AAATTGAATC CATCAACATG
CCCGCAGGCG CTGCTTTACA GATCACCGTC AGCATCGGTA TGGTCACCTG CATCGGCGGT
TCAGGACAAA ATCTGGACAA CCTGCTGAAA ATCGCCGATT TGGCGGTCTA TAAAGCCAAA
AATAGCGGCC GTAACCGGGT CGCCACGCCA GAACTCCTGC CGCACCATTC CACCGAGATC
TAA
|
|---|
| Protein sequence | MAAIMQVEFY PYSSQASGSK MHTTELPDAT KLRLALIVFL LVFCTCILGI ESRPIGLLAL
FWPTNAVLLA VLVRYPAMGS PVGWLMAMSG YLAADLITGS PLGKAILLNG ANIAGVAVGF
YLFMRLSPQV RTLERTSSSI YLFAICLASA TATALLGAGA SVLLFGRQYL PSLALWLSSE
FTNYITLMPF ILAFPRDWKG YLRSIFQAVT LRSQWPNTVR KIAVLLLLLL ACFGSILIGG
PGAVIFPMPI LLWLAMSFSL FSTMIAVLVY VLWCHLAIDL GLITTNLDMK MLQNTVSMRL
GVALLALGPI AVASMNFARN ALLQRLEHVA NHDALTHVLT RSAFMQRGTR LVSQKGERIC
IMMLDIDYFK SINDRFGHAG GDAALLSFTR AITGDLRDND LFGRMGGEEF AIVAPIAQQQ
DALSLAERLR HRVEIESINM PAGAALQITV SIGMVTCIGG SGQNLDNLLK IADLAVYKAK
NSGRNRVATP ELLPHHSTEI
|
|---|
| |