Gene Spro_2478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpro_2478 
Symbol 
ID5603003 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSerratia proteamaculans 568 
KingdomBacteria 
Replicon accessionNC_009832 
Strand
Start bp2715975 
End bp2719130 
Gene Length3156 bp 
Protein Length1051 aa 
Translation table11 
GC content58% 
IMG OID640938017 
Producthydrophobe/amphiphile efflux-1 (HAE1) family protein 
Protein accessionYP_001478707 
Protein GI157370718 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCAGT TCTTTATTCG GCGGCCGGTG TTTGCCTGGG TGATTGCGAT CATCATCATG 
CTGTGTGGCC TGATGTCGAT CAATTCGCTC CCCATCTCGC AATATCCGGA CGTCTCCCCA
CCGCAGATTT CCATTTCCGC CACCTACCCG GGGGCCGATG CGGAAACTCT GGAAAACAGC
GTTACCCAGG TGATTGAGCA GCAGCTTACC GGCCTGGACG GACTGCTTTA TTTTTCTGCT
ACCAGCAGCT CCGACGGTTC GGTGAGCATT AACGTGACCT TTGATCAGGG CACGGATCCG
GATATCGCTC AGGTGCAGGT GCAAAACAAG GTGCAGCAGG CGGAAAGCCG TCTGCCGGCC
GAGGTGACCG CTCAAGGGGT CACGGTCAAG AAATCCCAGA GCAGTTTTTT GCTGATCGTC
GGGCTGTATG ATGAAACCGA CAAGGCCAGC ATGGCGGATA TTTCCGACTA TCTGGTGAGC
AACATTCAGG ATCCGCTGTC GCGCATAGAC GGCGTCGGTG ATGTGCAGGT ATTCGGGTCA
GAATACGCGA TGCGCATCTG GCTTAACCCG ACCAAAATGG CGTCTTTTTC ACTGATGCCG
TCCGATGTGG AAACGGCGAT TGAGGCGCAA AACACCCAGG TTTCTGCCGG TAAGGTCGGC
GATTTGCCTT CCGGTGCCGA TCAGCAACTG ACCGCCACGG TGAAGGCGCA GTCGCGGCTG
CAAACGCCGG AGCAGTTCCG CAATATTATC CTGAAAAGCG ACAGCAGCGG GGCGTTGGTG
CGCCTGGGCG ATGTGGCACG GGTTGAACTG GGCAACGAGG ATTACTCCTC CAGTGCCCGC
TTGAATGGCC ACCCGGCCTC AGGGATTGCC GTCAAGCTGG CCGCCGGGGC CAATGCGCTC
AATACCGCCA AACTGGTCAA GGCCAAGGTG GCGGAATACC AAACCTCAAT GCCGCATGGC
TACAAGGTGG CCTATCCGAA AGACAGCACC GACTTTATTA ATATCTCGAT CGAAGAGGTG
GTGAAAACCC TGATCGAGGC GGTGGTGTTG GTGGTGATCG TGATGTTTGT CTTCCTGCAG
AACTTGCGTA CCACGCTGAT CCCGACCATT ACCGTGCCGG TGGTGCTGTT GGGCACCTTC
GGTGTACTCG CCGCCTTCGG CTATTCAATC AACACCCTGA CGCTGTTTGG CATGGTACTG
GCTATCGGAC TCTTGGTGGA TGACGCCATC GTGGTGGTGG AGAACGTCGA ACGCGTGATG
CGGGAAGAGA AACTGCCGCC GCGCGAGGCA ACCGAAAAAT CGATGAAGGA AATCACCGGC
GCGCTGGTTG GCATTGCCAT GGTGCTGTCG GCGGTCTTCC TGCCGATGGC GTTTTTCGGC
GGTTCCACCG GGGTGATCTA CCGCCAGTTC TCGGTCACTA TTGTGGCTTC CATGGTGTTG
TCGGTGATCC TGGCGTTGAC CCTGGCTCCG GCACTGTGCG CCACCTTGCT GAAACCTGCG
CATGAGGAAC TGACCAACAA GGGCCTGCTG GGCAAATTTA ACCGCGGCTA TAACCGCCTG
CAGGAGAAAT ATGCCGATAA GGTCGGCAGG GTGATCCACA GCCCAATGCG CTATCTGTTG
CTGTATGGCC TGTTGTTGAT TGCCGCTGCC GTGATGTATA TGCGTTTGCC GACCGGCTTT
CTGCCCAATG AAGATCAGGG GGTGGTGATG GTGCAGTATA CGCTGCCTGC CGGTGCCACC
AATGCCCGTA CCTCGGCGGT CAGTGACGAA GTAAAAGATT ATTTCCTCAA CGATGAGAAG
GCCAACGTCA GCACCATTTT CACCATTAAC GGCTTTGGTT TCAGCGGCAG TGGACAAAAC
GCCGGTATGG CCTTCGTCAG CCTGAAAGAC TGGAGTTTAC GCTCCGGCAG TGCCAATACC
GCTGATGCGA TTGCCAAGCG TGCGATGGCG CACTTCGCCA AGATCCGCGA TGCCCAGGTG
TTCTCGATGA GCCCTCCGGC GATCGACGGT TTTGGCCAGT CTGACGGTTT CACCTTCGAA
TTGCAGGCCA AAGGCGCAAC GACCCGTGCA GAGTTGCAGG TGATGCGTGA CCAGATAATT
GCGGCGGCGG CGAAAAATCC CAGCCTGAGC GCGGTTCGCG CCAACACTCT GCCGGATACG
CCACAGCTGC AGGTGGAGAT CGACAATGAC AAACTGCAGG CGTTGGGGCT GAGTAATAGC
GACGTCAGCA GCACGCTTAC CAACGCCTTC GGCAGCACCT ATATCAACGA CTTTATCGAC
CGCAACCGGG TGAAAAAAGT CTATATGCAG GGTGACGTCG AGTACCGTTC AAAACCGGAA
GATCTCGAAA AATGGTTTGT CCGTGGGACT TCCAGCAGCG GTACCACCAG CATGACGCCG
TTCTCGGCCT TTGCCTCTTC CCACTGGATC TACGGGCCGG AAAACCTGTC GCGCTATAAC
GGCCTGTCGT CGTTTGAGAT CACCGGTGAA GGCGCGCCCG GTACCAGTTC CGGTACGGCG
ATGGATGAGA TGGCAAAGCT GGCGGCGAAG TTCTCTTCCG CCAGCAGCTT TTCCTGGAGC
GGTCTGTCTT ATCAGGAGCG CTTGACCAGC GGACAGGCTG GGTCCCTGTA TGCCATTTCA
CTGGTGGTGG TGTTCCTGTG CCTGGCCGCA CTGTATGAGA GCTGGTCAAT TCCGTTCGCG
GTGATGATGG TGGTGCCGAT GGGCGTGGTC GGGTCGCTGT TGGCGATCAC CCTGCGTGGG
CTGGAAAACG ATATTTACTT CCAGGTGGCG CTGTTGACCA TCATTGGGCT GTCGGCCAAG
AACGCCATTC TTATCGTCGA ATTCGCCGAA GAGAAATACC TGCGGGGCGA AACCTTGATC
GCCGCGGCGG TCGAGGCATC CCGCATGCGT CTGCGCCCGA TTCTGATGAC CTCCCTGGCG
TTTAGCGCCG GCGTGTTACC GCTGGCGGTG TCCAGCGGTG CCGGGGCCAA CAGCCGCATC
GCTATCGGTA CCGGGATTAT TGGCGGCACC ATCACGGCAA CGATACTGGC GATCTTCTTC
GTTCCCTTGT TCTACGTCTT GGTGCGCCGG ATGTTTTCAC GCAAAACCAC CGTCGCCAAA
CCGCTGGAAA ACACTGCGCC GCAGGCAGGA GAATAA
 
Protein sequence
MAQFFIRRPV FAWVIAIIIM LCGLMSINSL PISQYPDVSP PQISISATYP GADAETLENS 
VTQVIEQQLT GLDGLLYFSA TSSSDGSVSI NVTFDQGTDP DIAQVQVQNK VQQAESRLPA
EVTAQGVTVK KSQSSFLLIV GLYDETDKAS MADISDYLVS NIQDPLSRID GVGDVQVFGS
EYAMRIWLNP TKMASFSLMP SDVETAIEAQ NTQVSAGKVG DLPSGADQQL TATVKAQSRL
QTPEQFRNII LKSDSSGALV RLGDVARVEL GNEDYSSSAR LNGHPASGIA VKLAAGANAL
NTAKLVKAKV AEYQTSMPHG YKVAYPKDST DFINISIEEV VKTLIEAVVL VVIVMFVFLQ
NLRTTLIPTI TVPVVLLGTF GVLAAFGYSI NTLTLFGMVL AIGLLVDDAI VVVENVERVM
REEKLPPREA TEKSMKEITG ALVGIAMVLS AVFLPMAFFG GSTGVIYRQF SVTIVASMVL
SVILALTLAP ALCATLLKPA HEELTNKGLL GKFNRGYNRL QEKYADKVGR VIHSPMRYLL
LYGLLLIAAA VMYMRLPTGF LPNEDQGVVM VQYTLPAGAT NARTSAVSDE VKDYFLNDEK
ANVSTIFTIN GFGFSGSGQN AGMAFVSLKD WSLRSGSANT ADAIAKRAMA HFAKIRDAQV
FSMSPPAIDG FGQSDGFTFE LQAKGATTRA ELQVMRDQII AAAAKNPSLS AVRANTLPDT
PQLQVEIDND KLQALGLSNS DVSSTLTNAF GSTYINDFID RNRVKKVYMQ GDVEYRSKPE
DLEKWFVRGT SSSGTTSMTP FSAFASSHWI YGPENLSRYN GLSSFEITGE GAPGTSSGTA
MDEMAKLAAK FSSASSFSWS GLSYQERLTS GQAGSLYAIS LVVVFLCLAA LYESWSIPFA
VMMVVPMGVV GSLLAITLRG LENDIYFQVA LLTIIGLSAK NAILIVEFAE EKYLRGETLI
AAAVEASRMR LRPILMTSLA FSAGVLPLAV SSGAGANSRI AIGTGIIGGT ITATILAIFF
VPLFYVLVRR MFSRKTTVAK PLENTAPQAG E