Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spro_2420 |
Symbol | |
ID | 5603795 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Serratia proteamaculans 568 |
Kingdom | Bacteria |
Replicon accession | NC_009832 |
Strand | + |
Start bp | 2651424 |
End bp | 2653298 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640937959 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_001478649 |
Protein GI | 157370660 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2203] FOG: GAF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.533876 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.201744 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTACGAAC CCTGTTTTCC AGAAAATGAA ACCGAACGGC TGTCGGTTCT GCATTCACTC AACGTACTGG ACACGAATTC GGTAGAGAAA TTAGACCGGG TCACGCGCCT GGCCGCCAAA TATTTTGGCG TCAGTATTGC CCTGATTTCC TTGATCGATC GTGAACGCCA ATGGTTCCTT TCTCGCTCGG GTTTGGAGGC ACGGGAATCG CCACGCAATA TTTCGTTTTG CGGTCATGCC ATTTTGCAAC GTGATGCGTT GGTGGTGCCG GATACCGCGG CCGATCCACG TTTCTTCGAC AACCCCTTGG TCACCGGTGG GCCAAAAATC GGTTTTTATG CCGGGCAACC CTTGTTGTCT CTGGATGGTC TGCCGCTGGG TACCCTGTGC ATTATCGACG GTCACCCACA GGCGTTCTCT TCAGAGATGG TGCATGATTT ACGAGATTTT GCCGCCGTTA TCGAAGAGTA TTTACACAGT ATTGAGCGTG ATATTTATAC CGAGGCTCTG AAATCAAACC TGCAACGTAG CGAAGCCTTA TTTGAACAGA CCTTTTCACA AGCGGCAGTG GGCATGGCCC TGGTCTCATT AGAGGGATAT TGGCTGCGGG TGAATCCGCG GCTCTGTGAA ATGTTGCAGT ACCCTGAACG GGCACTGCTG GAGCGTACCT TCCAGGACAT TACCTATAGC GAAGACCTGC ACAACGACCT CGGGCTGCTG CAACAGTTAT TGGCCAATGA AATAGACACC TATTCGATGG AAAAGCGCTA TATCCGCGCT GATGGCTCAA GGATTTGGGT TCAGCTTACC GTGTCGCTTA ATCGTCTGCC CAATGGTGAG CCCCATCATT TTATCTCGGT TATTGTCGAT ATCAGCGAGC GCAAAGCGGC AGAGGCCGAC CTCTACACTC TGCAACATGA GCTCGAAGAC AGGGTAGTGA CACGTACCCG TGAGTTGAAT TTTGCCGTTA ATAAACTCAA TCACGAGATT GCCAATCGGG CACTCACAGA GCTGCAACTG AGTAGTGAAA AAGAACGTCT GCGGGCCATT ACCGATAATA TGCCGGCCTT GATCAGCCAG ATCGACGCCA ATGAGCGTTA TCTGTTTGCC AACAGCGCTT ACAAAAGCTG GTTCGGTCTG GATGAATCTC ACCTCAGCGC GATGACCGTA CAGGCATTTA TGGGCGACGA GGCTTATGCC GCAGCCAAGC CTATGATCGA GCGGGCGTTA AAGGGGGAAA CCGTCAGTTT TGAGAACGAA CTGCAAACGC GCCAGGGGAC AGCGATCATT CATAACACCC TGGTACCCAG CGAAACCCGG GGCTTTTATA TTCTTTCCAT GGATATTACC GAGCTTAAAC GTTTGCAGCG GCGGTTAGAG TACGACGTTT CTCATGACAT GCTGACCGGG TTAACCAATC GGCGGGCTTT CTTGCTCCGG TTAGGCGCGA CGCTGCAGGC TTGTTGCCCA CAGCAGCAGA TGGCGTTGCT GTTTATCGAT CTTGATGGTT TCAAAACGCT TAACGACAGT TTTGGCCATG ATTTCGGCGA TCTTATCCTG AAAACCTTCG CCGAATTGCT CAGTGTCTGT GCCGGGCCTC ATCACAGCGT TTCGCGCCTC GCCGGCGATG AGTTTACTGT CATTCTCTGG CCTTTGGCGC ATCCGCAGCT GCAGGTCAGC GCGTTTTGCG AGAGCGTGTT GGCCAGGTTG GCGGCAACGG AACGAGTCGG TAATCAAAAC GTGAGACTCT CTGCCAGTAT CGGTGCAGCC ATTACTTCTG GCGACGATAT GAGCGCCGAA GCCCTGCTGA CCAAAGCAGA CGATGCCATG TATCAGGCCA AATCCGCCGG CAAAGGGACC TATGCTATCC GTTAA
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Protein sequence | MYEPCFPENE TERLSVLHSL NVLDTNSVEK LDRVTRLAAK YFGVSIALIS LIDRERQWFL SRSGLEARES PRNISFCGHA ILQRDALVVP DTAADPRFFD NPLVTGGPKI GFYAGQPLLS LDGLPLGTLC IIDGHPQAFS SEMVHDLRDF AAVIEEYLHS IERDIYTEAL KSNLQRSEAL FEQTFSQAAV GMALVSLEGY WLRVNPRLCE MLQYPERALL ERTFQDITYS EDLHNDLGLL QQLLANEIDT YSMEKRYIRA DGSRIWVQLT VSLNRLPNGE PHHFISVIVD ISERKAAEAD LYTLQHELED RVVTRTRELN FAVNKLNHEI ANRALTELQL SSEKERLRAI TDNMPALISQ IDANERYLFA NSAYKSWFGL DESHLSAMTV QAFMGDEAYA AAKPMIERAL KGETVSFENE LQTRQGTAII HNTLVPSETR GFYILSMDIT ELKRLQRRLE YDVSHDMLTG LTNRRAFLLR LGATLQACCP QQQMALLFID LDGFKTLNDS FGHDFGDLIL KTFAELLSVC AGPHHSVSRL AGDEFTVILW PLAHPQLQVS AFCESVLARL AATERVGNQN VRLSASIGAA ITSGDDMSAE ALLTKADDAM YQAKSAGKGT YAIR
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