Gene Spro_2420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpro_2420 
Symbol 
ID5603795 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSerratia proteamaculans 568 
KingdomBacteria 
Replicon accessionNC_009832 
Strand
Start bp2651424 
End bp2653298 
Gene Length1875 bp 
Protein Length624 aa 
Translation table11 
GC content52% 
IMG OID640937959 
Productdiguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_001478649 
Protein GI157370660 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain
[COG2203] FOG: GAF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.533876 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.201744 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACGAAC CCTGTTTTCC AGAAAATGAA ACCGAACGGC TGTCGGTTCT GCATTCACTC 
AACGTACTGG ACACGAATTC GGTAGAGAAA TTAGACCGGG TCACGCGCCT GGCCGCCAAA
TATTTTGGCG TCAGTATTGC CCTGATTTCC TTGATCGATC GTGAACGCCA ATGGTTCCTT
TCTCGCTCGG GTTTGGAGGC ACGGGAATCG CCACGCAATA TTTCGTTTTG CGGTCATGCC
ATTTTGCAAC GTGATGCGTT GGTGGTGCCG GATACCGCGG CCGATCCACG TTTCTTCGAC
AACCCCTTGG TCACCGGTGG GCCAAAAATC GGTTTTTATG CCGGGCAACC CTTGTTGTCT
CTGGATGGTC TGCCGCTGGG TACCCTGTGC ATTATCGACG GTCACCCACA GGCGTTCTCT
TCAGAGATGG TGCATGATTT ACGAGATTTT GCCGCCGTTA TCGAAGAGTA TTTACACAGT
ATTGAGCGTG ATATTTATAC CGAGGCTCTG AAATCAAACC TGCAACGTAG CGAAGCCTTA
TTTGAACAGA CCTTTTCACA AGCGGCAGTG GGCATGGCCC TGGTCTCATT AGAGGGATAT
TGGCTGCGGG TGAATCCGCG GCTCTGTGAA ATGTTGCAGT ACCCTGAACG GGCACTGCTG
GAGCGTACCT TCCAGGACAT TACCTATAGC GAAGACCTGC ACAACGACCT CGGGCTGCTG
CAACAGTTAT TGGCCAATGA AATAGACACC TATTCGATGG AAAAGCGCTA TATCCGCGCT
GATGGCTCAA GGATTTGGGT TCAGCTTACC GTGTCGCTTA ATCGTCTGCC CAATGGTGAG
CCCCATCATT TTATCTCGGT TATTGTCGAT ATCAGCGAGC GCAAAGCGGC AGAGGCCGAC
CTCTACACTC TGCAACATGA GCTCGAAGAC AGGGTAGTGA CACGTACCCG TGAGTTGAAT
TTTGCCGTTA ATAAACTCAA TCACGAGATT GCCAATCGGG CACTCACAGA GCTGCAACTG
AGTAGTGAAA AAGAACGTCT GCGGGCCATT ACCGATAATA TGCCGGCCTT GATCAGCCAG
ATCGACGCCA ATGAGCGTTA TCTGTTTGCC AACAGCGCTT ACAAAAGCTG GTTCGGTCTG
GATGAATCTC ACCTCAGCGC GATGACCGTA CAGGCATTTA TGGGCGACGA GGCTTATGCC
GCAGCCAAGC CTATGATCGA GCGGGCGTTA AAGGGGGAAA CCGTCAGTTT TGAGAACGAA
CTGCAAACGC GCCAGGGGAC AGCGATCATT CATAACACCC TGGTACCCAG CGAAACCCGG
GGCTTTTATA TTCTTTCCAT GGATATTACC GAGCTTAAAC GTTTGCAGCG GCGGTTAGAG
TACGACGTTT CTCATGACAT GCTGACCGGG TTAACCAATC GGCGGGCTTT CTTGCTCCGG
TTAGGCGCGA CGCTGCAGGC TTGTTGCCCA CAGCAGCAGA TGGCGTTGCT GTTTATCGAT
CTTGATGGTT TCAAAACGCT TAACGACAGT TTTGGCCATG ATTTCGGCGA TCTTATCCTG
AAAACCTTCG CCGAATTGCT CAGTGTCTGT GCCGGGCCTC ATCACAGCGT TTCGCGCCTC
GCCGGCGATG AGTTTACTGT CATTCTCTGG CCTTTGGCGC ATCCGCAGCT GCAGGTCAGC
GCGTTTTGCG AGAGCGTGTT GGCCAGGTTG GCGGCAACGG AACGAGTCGG TAATCAAAAC
GTGAGACTCT CTGCCAGTAT CGGTGCAGCC ATTACTTCTG GCGACGATAT GAGCGCCGAA
GCCCTGCTGA CCAAAGCAGA CGATGCCATG TATCAGGCCA AATCCGCCGG CAAAGGGACC
TATGCTATCC GTTAA
 
Protein sequence
MYEPCFPENE TERLSVLHSL NVLDTNSVEK LDRVTRLAAK YFGVSIALIS LIDRERQWFL 
SRSGLEARES PRNISFCGHA ILQRDALVVP DTAADPRFFD NPLVTGGPKI GFYAGQPLLS
LDGLPLGTLC IIDGHPQAFS SEMVHDLRDF AAVIEEYLHS IERDIYTEAL KSNLQRSEAL
FEQTFSQAAV GMALVSLEGY WLRVNPRLCE MLQYPERALL ERTFQDITYS EDLHNDLGLL
QQLLANEIDT YSMEKRYIRA DGSRIWVQLT VSLNRLPNGE PHHFISVIVD ISERKAAEAD
LYTLQHELED RVVTRTRELN FAVNKLNHEI ANRALTELQL SSEKERLRAI TDNMPALISQ
IDANERYLFA NSAYKSWFGL DESHLSAMTV QAFMGDEAYA AAKPMIERAL KGETVSFENE
LQTRQGTAII HNTLVPSETR GFYILSMDIT ELKRLQRRLE YDVSHDMLTG LTNRRAFLLR
LGATLQACCP QQQMALLFID LDGFKTLNDS FGHDFGDLIL KTFAELLSVC AGPHHSVSRL
AGDEFTVILW PLAHPQLQVS AFCESVLARL AATERVGNQN VRLSASIGAA ITSGDDMSAE
ALLTKADDAM YQAKSAGKGT YAIR