| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_2233 |
|---|
| Symbol | tppB |
|---|
| ID | 5605180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 2432574 |
|---|
| End bp | 2434094 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640937772 |
|---|
| Product | putative tripeptide transporter permease |
|---|
| Protein accession | YP_001478462 |
|---|
| Protein GI | 157370473 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3104] Dipeptide/tripeptide permease |
|---|
| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000348133 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTCAACAG CAAACAACAA CAGCGAACAC CCTGAAAGCG TTAGTCTCAA TGCCTTCAAA
CAGCCCAAGG CGTTTTACCT GATCTTCTCT ATTGAGCTCT GGGAACGTTT TGGTTATTAC
GGTCTGCAAG GCATCATGGC GGTTTATCTG GTCAAGATGC TGGGCCTGAG CGAAGCCGAC
TCGATCACCC TGTTCTCCTC CTTCAGCGCG CTGGTCTATG GCTTCGTTGC CATCGGTGGC
TGGCTTGGGG ATAAAGTACT GGGCTCCAAG CGCGTGATCG TGCTGGGTGC GCTGGTGCTG
GCCGTCGGCT ATGCCATGGT GGCTTACTCC GGCCATGAGA TCTTCTGGGT ATACCTGGGT
ATGGCGACCA TCGCCGTGGG CAGTGGCCTG TTCAAGGCTA ACCCGTCCTC CCTGCTGTCA
ACCTGCTACG AGAAAGACGA TCCGCGTTTG GACGGTGCAT TCACCATGTA CTATATGTCC
GTCAATATCG GTTCTTTCCT GTCCATGCTG GCCACGCCGT GGTTGGCGGC CAAATATGGC
TGGAGCGTCG CGTTCTCTCT GAGCGTCGTC GGCATGCTGA TCACCCTGGT CAACTTTATG
GTGTGTCACA AGTGGGTGAA ACAACACGGT TCCAAGCCTG ACTTTAAACC GCTGCAGGTT
AAAAAACTGC TGATGGTGCT GGTGGGCGTG GTGGCGCTGG TCGCACTTTC AAGCTGGCTG
CTGCATAACC AGATCATTGC TCGCTGGGCG CTGGCGATTG TTTCCATCGG TATCGTGATT
GTATTCGCCA AAGAAACCTT CGCGCTGCAC GGCGCGGCAC GTCGCAAGAT GATCGTTGCC
TTCCTGTTGA TGCTGGAAGC CGTCGTGTTC TTCGTGCTGT ACAGCCAGAT GCCAACCTCG
TTGAACTTCT TCGCCATCCA CAACGTTGAG CACAACATTC TCGGTCTGGC GTTTGAACCC
GAACAGTATC AGGCACTGAA CCCGTTCTGG ATCATGCTGG CCAGCCCGAT TCTGGCGGCG
CTGTATAACA AGATGGGCGA CCGTCTGCCG ATGCCGCACA AGTTCGCCTT CGGTATGATC
CTGTGCTCCG GCGCCTTCCT GGTGTTGCCG TGGGGCGCCA GCTTCGCCAA TGAGCAGGGT
ATCGTTTCGG TGAACTGGCT GATCCTGAGC TATGCGCTGC AGAGTATCGG CGAACTGATG
ATCTCCGGCC TGGGCCTGGC GATGGTCGCG CAGTTGGTGC CACAACGTCT GATGGGCTTT
ATCATGGGTT CCTGGTTCCT GACCACCGCC GCCGCCGCGC TGATTGCCGG TAAAGTGGCA
GGTCTGACCG CCGTGCCTGG CGACGTCAAC GATGCGCACG CTTCACTGGC TATCTACAGC
CACGTGTTTA TGCAAATCGG TATCGCTACC GCCGTGATCG CCATCCTGAT GATGCTGACC
GCGCCGAAGC TGCATCGCAT GACGCTGGAC ACCGCAGAAG ATACCGAGAA GAAAGCTCAG
GCGGCCGCTA TCACCAACTG A
|
|---|
| Protein sequence | MSTANNNSEH PESVSLNAFK QPKAFYLIFS IELWERFGYY GLQGIMAVYL VKMLGLSEAD
SITLFSSFSA LVYGFVAIGG WLGDKVLGSK RVIVLGALVL AVGYAMVAYS GHEIFWVYLG
MATIAVGSGL FKANPSSLLS TCYEKDDPRL DGAFTMYYMS VNIGSFLSML ATPWLAAKYG
WSVAFSLSVV GMLITLVNFM VCHKWVKQHG SKPDFKPLQV KKLLMVLVGV VALVALSSWL
LHNQIIARWA LAIVSIGIVI VFAKETFALH GAARRKMIVA FLLMLEAVVF FVLYSQMPTS
LNFFAIHNVE HNILGLAFEP EQYQALNPFW IMLASPILAA LYNKMGDRLP MPHKFAFGMI
LCSGAFLVLP WGASFANEQG IVSVNWLILS YALQSIGELM ISGLGLAMVA QLVPQRLMGF
IMGSWFLTTA AAALIAGKVA GLTAVPGDVN DAHASLAIYS HVFMQIGIAT AVIAILMMLT
APKLHRMTLD TAEDTEKKAQ AAAITN
|
|---|
| |