Gene Spro_1898 details

Gene Information

• Locus tag: Spro_1898
• Symbol: rne
• ID: 5606388
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Serratia proteamaculans 568
• Kingdom: Bacteria
• Replicon accession: NC_009832
• Strand: -
• Start bp: 2080764
• End bp: 2084132
• Gene Length: 3369 bp
• Protein Length: 1122 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 640937434
• Product: ribonuclease E
• Protein accession: YP_001478129
• Protein GI: 157370140
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1530] Ribonucleases G and E
• TIGRFAM ID: [TIGR00757] ribonuclease, Rne/Rng family

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.000000446531
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 4
• Fosmid unclonability p-value: 0.000483574
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAAAAGAA TGTTGATTAA CGCAACTCAG CAGGAAGAGT TGCGTGTTGC CTTGGTAGAT 
GGACAGCGGC TGTATGATTT GGATATTGAA AGTCCGGGTC ATGAACAGAA AAAAGCGAAT 
ATTTACAAAG GCAAAATCAC TCGTATAGAA CCAAGTCTTG AAGCAGCGTT CGTAGATTAC 
GGCGCCGAAC GACATGGTTT CCTCCCTCTT AAAGAAATCT CTCGCGAATA TTTCCCAAGT 
AACTACTCTT CTCATGGTCG CCCAAACATC AAAGATGTGC TGCGCGAAGG CCAGGAAGTG 
ATCGTTCAGG TTGATAAAGA AGAACGTGGT AACAAAGGCG CTGCCTTGAC CACCTTCATC 
AGCCTGGCCG GCAGTTATCT GGTGCTGATG CCGAACAACC CACGTGCCGG CGGTATTTCA 
CGCCGCATTG AGGGTGACGA TCGCACCGAA CTGAAAGAAG CTCTTTCTTC CCTGCAACTG 
CCAGATGGCA TGGGTCTGAT TGTTCGCACC GCGGGCGTGG GCAAATCTGC CGATGCGCTG 
CAGTGGGATC TGTCATTCCG CCTGAAGCAC TGGGAAGCAA TTAAAAAAGC CGCTGAAGGC 
CGCGCTGCGC CATTCCTGAT CCATCAGGAA AGCAACGTTA TCGTGCGTGC ATTCCGCGAC 
TATCTGCGCC CGGACATCGG CGAAATCCTG ATCGACAACC CAAAGGTTCT CGATCTGGCC 
AAAGAGCACA TCGCTGCCCT GGGCCGTCCG GATTTCAGCA GCAAGATCAA ACTGTACAGC 
GGCGAAATCC CTCTGTTCAG CCACTATCAA ATCGAATCTC AAATTGAATC CGCTTTCCAG 
CGTGAAGTTC GCCTGCCTTC CGGCGGTTCG ATCGTTATCG ACTCCACCGA AGCGCTGACC 
GCTATCGATA TCAACTCCGC GCGAGCAACC CGCGGCGGCG ATATCGAAGA GACTGCGTTC 
AACACCAACC TGGAAGCGGC GGACGAGATT GCTCGCCAGC TGCGTCTGCG TGACCTTGGC 
GGCCTGATCG TTATCGACTT TATCGATATG ACCCCGGTTC GCCATCAACG TGAAGTGGAA 
AACCGTCTGC GTGACGCCGT CCGTCAGGAC CGTGCCCGTA TCCAAATCGG TCGCATTTCC 
CGTTTCGGCC TGCTTGAGAT GTCGCGTCAG CGCCTCAGCC CATCACTGGG TGAATCCAGC 
CATCACGTCT GCCCGCGCTG TAACGGCACC GGCACCATCC GTGATAACGA ATCGCTGGCA 
CTTTCCATTC TTCGTCTGAT CGAAGAAGAA GCGCTGAAAG AAAATACCAA AGAAGTTCAC 
GCCATCGTGC CAGTACAGGT GGCATCTTAC CTGCTGAACG AAAAGCGTGA ATCGGTGAGC 
GCGATCGAAA AACGTCAGGG TGGCGTGAAA GCGATCATCG TGCCGAACGA TCAGATGCAA 
ACCCCGCACT ACTCGGTACT GCGCGTGCGT AAGGGTGAAG AAACACCAAC CCTGAGCTAC 
CTGTTGCCGA AACTGCATGA AGAAGAGATG GCCCAGCCGC TGGAAGATGC ACCGATGGAG 
CGCAAGCGTC CGGAGCAACC TGCACTGGCT TCGTTCTCTC TGGCTGCAGA TGCCCCACCA 
CCAGCAGAAG AACCTGTTGT GGCTCAAGCT ACCGTCGCCG CTACTGCTAC CAAGCAAACC 
GCACCAGCCG CTGCCAAGCC GGGCCTGTTG GGCCGTCTGT TCGGTGGTCT GAAAGCGCTG 
TTTGCCGGTG AAGAGCAGCC GGTTGTCGAA GCCAAACCTG TGGTTGAAGC GCCGAAGTCT 
GAAGGCAACG GTGAAAACCG CCGTCAGGAT CGTCGTGGTC AACGTCGTCA GGGTACCGGT 
CGTAAAGATC GTGGTGAGCG CGGAGAACGT GGTGAGCGTG GCGATCGTCC AGAACGTGGC 
GAGCGTAAAG AGCGCGGTGA AGGTCGTGAT AACCGTGAGC CGCGTGAAAA TCGCGAACCT 
CGCGACAACC GCGAAGGCCG TGAAACACGC GAAGTGCGTG ATGAGCAGCG TCGTAACCGC 
CGTAATGCGC CACAAACCAC TGCTGCCGTA ACCGAAGAGC CGCTGTCTGA AGAAGCCGCC 
AAGGCACAGC GCGAAGAGCA GCAACAGCGC CGTGACCAAC GTGCCGAACG CCAGCGTCGT 
CGTCAGGAAG AGAAACGTCA GGCTCAGCAG GAAGTGGCCG CGCTGGAAAG CGTAGAAACC 
GCAACCCCTG CCAACGCCAG CGTTGACGAA GATCTCGAAG AACGTCAGAT GCAGAACATG 
CAGCGTCGTC AGCGTCGTCC TCTGTCGCAG AAAATTCGCG TGCTGTCTGC GGAAGAAGAA 
CTGCATCGTG CAGCGGAAGA ACTGCTGGCG CCAAAAGCAC CGGTAGTGAA AGCCCAGGAC 
GTGAAGCCAG CCCAGGTTGA AGACAGCGTT AAACTGCTGC CGGAAACCCT TGAAGCACCG 
GGCGAAGATG ATGCACAGGA TAACCGAGCT AACGGCGAAA ACGGCATGCC ACGCCGCTCA 
CGTCGTTCTC CGCGCCACCT GCGTGTCAGC GGTCAACGTC GTCGCCGTTA CCGTGACGAG 
CGTTACCCTA CCCAGTCGCC AATGCCGCTG GCAGGTGCTT TCGCCTCTCC AGAGATGGCT 
TCCGGCAAGG TGTGGGTGAG TTACCCTGTC ACACAAGCCG CGCAAGTGAT TGAAGAAGCA 
GAAGTTCAGA CTGAAGCTGT TGAAATCGCT GCCGACAACG TCATGGCGCA GGAAGCCGTC 
AGCGTAGCCG CTCCGGTTAT TGCCCAAGCC GTTGCGCCGG TGATCGAACC AGAAGTTGTG 
GCCCCGGCAG AAGAACCAGC CCAACCGGTT GTTGAAACCG CTGAGCCGGC AATGGCTGCC 
CAGGCAGAAG AAACCCCGGC AGCACCGGTG GCTGAAGCGC CTGCAGTGGT AGAAGAAACC 
GCGGTGGTTG AAGCTGCACC GGTGGTAGAG GAAGCCCCAG CGGTTGAACC TGCCCCAGTG 
GTTGAAGAAA CGCCAGTCGT TCCAGCAGCA ACCGTTGCTG AAGAAACTGT CGCTGAACCA 
GCTCCGGTGT TCGTTGAGCC CGTCGTTGAA GCCGCACCCG TGCAGGAAGT TGCTGCCGCG 
GTAGTGGTCG AAGAAAAAGC GCCGGTTGTG CAACAGCAAC CAGTACCGGT GGCAGATGTG 
CTGTATAAAC ACATCGCTAC TGCGCCAATG ACCAAGGCTC CTGCGCCGGA CTATGTACCG 
GAACAGCAGC AGCAAAGTGA TTGGCAGCGC CCTTCCTTCA ACTTCGAAGG CAAAGGTTCT 
GCGGGTGGTC ATGCGGCGGC AAACCAGGCT ACCGCACCGG CAACCAAACC GCAGCCGGTT 
AACGATTAA 

 

Protein sequence

MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY 
GAERHGFLPL KEISREYFPS NYSSHGRPNI KDVLREGQEV IVQVDKEERG NKGAALTTFI 
SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALSSLQL PDGMGLIVRT AGVGKSADAL 
QWDLSFRLKH WEAIKKAAEG RAAPFLIHQE SNVIVRAFRD YLRPDIGEIL IDNPKVLDLA 
KEHIAALGRP DFSSKIKLYS GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDSTEALT 
AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQREVE 
NRLRDAVRQD RARIQIGRIS RFGLLEMSRQ RLSPSLGESS HHVCPRCNGT GTIRDNESLA 
LSILRLIEEE ALKENTKEVH AIVPVQVASY LLNEKRESVS AIEKRQGGVK AIIVPNDQMQ 
TPHYSVLRVR KGEETPTLSY LLPKLHEEEM AQPLEDAPME RKRPEQPALA SFSLAADAPP 
PAEEPVVAQA TVAATATKQT APAAAKPGLL GRLFGGLKAL FAGEEQPVVE AKPVVEAPKS 
EGNGENRRQD RRGQRRQGTG RKDRGERGER GERGDRPERG ERKERGEGRD NREPRENREP 
RDNREGRETR EVRDEQRRNR RNAPQTTAAV TEEPLSEEAA KAQREEQQQR RDQRAERQRR 
RQEEKRQAQQ EVAALESVET ATPANASVDE DLEERQMQNM QRRQRRPLSQ KIRVLSAEEE 
LHRAAEELLA PKAPVVKAQD VKPAQVEDSV KLLPETLEAP GEDDAQDNRA NGENGMPRRS 
RRSPRHLRVS GQRRRRYRDE RYPTQSPMPL AGAFASPEMA SGKVWVSYPV TQAAQVIEEA 
EVQTEAVEIA ADNVMAQEAV SVAAPVIAQA VAPVIEPEVV APAEEPAQPV VETAEPAMAA 
QAEETPAAPV AEAPAVVEET AVVEAAPVVE EAPAVEPAPV VEETPVVPAA TVAEETVAEP 
APVFVEPVVE AAPVQEVAAA VVVEEKAPVV QQQPVPVADV LYKHIATAPM TKAPAPDYVP 
EQQQQSDWQR PSFNFEGKGS AGGHAAANQA TAPATKPQPV ND