| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_1805 |
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| Symbol | |
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| ID | 5605212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Serratia proteamaculans 568 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009832 |
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| Strand | - |
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| Start bp | 1988172 |
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| End bp | 1990166 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640937337 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001478036 |
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| Protein GI | 157370047 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.376035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00814736 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCAAA ACGACACTGA AATTGTGGCA CGTCGTAGCC ATATCAATCC TCCGGTATTT
TTTATTTCTG CCGCTTTAAT CATCGTCCTG GTGGCCTTTG CCGCCCTTTA CCCCGAGTTG
GCCGATCGCA AATTCAAAGC GTTGCAACTG GGTATTTTCA CTAACGCCAG CTGGTTTTAT
ATTCTGGCGG TGGCATTGAT CCTGATGAGC GTGACCTATC TGGGTTTGTC GCGTTACGGC
AATATCAAGC TCGGGCCGGA TCACGCCCAG CCAGACTTTA GCTATGTTTC CTGGTTCGCC
ATGCTGTTTT CCGCCGGGAT GGGCATTGGC CTGATGTTCT TTGGCGTAGC CGAACCCGTA
ATGCATTACC TTTCTCCCCC AGTCGGAACG CCGGAAACAG TGGAAGCGGC TAAACAGGCC
ATGCGCCTAA CCTTCTTCCA CTGGGGCCTG CACGCCTGGG CAATCTACGC CATCGTGGCG
TTGATTCTGG CCTTCTTCAG CTATCGCCAC GACCTGCCGC TGACGCTGCG TTCCGCGCTG
TATCCGATTA TCGGCGATCG CATCTATGGG CCAATTGGCC ACGCGGTAGA TATTTTTGCG
GTGATAGGTA CCGTGTTCGG TGTCGCAACC TCGCTGGGCT ACGGTGTGTT GCAGGTTAAC
GCCGGTCTTA ACCACCTGTT TGGCTTGCCG ATCAACGCAA CGGTGCAGGT GATTCTGATC
GTGGTGATCA CCGGGTTGGC TACGCTGTCA GTGGTTTCCG GGCTGGATAA AGGCATCCGC
ATTCTGTCCG AATTGAACCT CGGCCTGGCG GTGTTGCTGC TGGTGCTGGT GGCTGCGCTC
GGCCCGACCG TGCTGCTGTT AAAATCCTTT GTCGAAAATA CCGGCGGTTA CCTTTCTGAC
ATCGTCAGCA AGACCTTTAA CCTGTATGCC TATGAGCCGA AGTCCAGTAA CTGGCTGGGC
GGTTGGACAC TGCTGTATTG GGGCTGGTGG TTGTCATGGT CGCCTTTCGT CGGCATGTTT
ATTGCCCGCG TTTCACGCGG ACGTACCATC CGTGAATTCG TTACCGGCGT GCTGTTCGTC
CCTGCCGGCT TTACGCTACT GTGGATGACC GTGTTCGGTA ATAGTGCCAT TAATCTGATC
ATGGCCGAAG GTGCGCGCGA TTTGGCTAAC ACGGTGCAAA ATGACGTAGC ACTGGCACTG
TTCAACTTCC TGGAACACTT CCCGTTTTCT AATATCTTGT CGTTTATCGC GATGGCCATG
GTGGTAGTGT TCTTCGTCAC TTCCGCGGAT TCGGGGGCGA TGGTGGTAGA TACCCTGGCT
TCCGGGGGTA CCGACCAAAC TCCGGTCTGG CAGCGGATTT TCTGGGCCGG CATGATGGGC
CTGGTCGCCA TTGCCTTGCT GCTCGCCGGT GGGCTGAGCG CGCTGCAAAC CGTGACCATC
GCCAGTGCCC TGCCGTTCTC GATGATCTTG CTGGTGTCGA TCTACGGGCT GTTAAAAGCC
TTGCGTATCG ATGCCCACAA ACGCGACAGC CAGACGACGA CCACGATTGC ACCGACTGCC
GCACGCAATC CGATCTCGTG GCAACGGCGT TTACGCAATA TTGCCTATTT CCCTAAACGC
TCACAGGTCA AACGCTTTGT CGGTGAAGTG GTTCAGCCGG CGATGGCGCT GGTGGAAGCC
GAATTGGCCA AACAGAACAC CACCTCCTCG ATTGACGATT CACAGGACGA TCGCATCCGT
TTCGAAGTTG ATTTGGGTGA AGACCTGAAC TTTGTCTATG AGGTTCGCCT GCGGGCCTAC
ATTCAACCGG CCTTTGCGTT GGCGGGCTTG AAAGACGAAG AACGTGATGA GGAACATAAG
TACTATCGGG GTGAAGTCCA CCTGAAGGAA GGGGGCCAGG ATTACGATGT GATGGGCTGG
ACGCAAGAAC AGATCATTCA CGATATTCTC GACCAGTACG AGAAACACCT GCACTTCCTG
CACCTGGTAC GCTAG
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| Protein sequence | MSQNDTEIVA RRSHINPPVF FISAALIIVL VAFAALYPEL ADRKFKALQL GIFTNASWFY
ILAVALILMS VTYLGLSRYG NIKLGPDHAQ PDFSYVSWFA MLFSAGMGIG LMFFGVAEPV
MHYLSPPVGT PETVEAAKQA MRLTFFHWGL HAWAIYAIVA LILAFFSYRH DLPLTLRSAL
YPIIGDRIYG PIGHAVDIFA VIGTVFGVAT SLGYGVLQVN AGLNHLFGLP INATVQVILI
VVITGLATLS VVSGLDKGIR ILSELNLGLA VLLLVLVAAL GPTVLLLKSF VENTGGYLSD
IVSKTFNLYA YEPKSSNWLG GWTLLYWGWW LSWSPFVGMF IARVSRGRTI REFVTGVLFV
PAGFTLLWMT VFGNSAINLI MAEGARDLAN TVQNDVALAL FNFLEHFPFS NILSFIAMAM
VVVFFVTSAD SGAMVVDTLA SGGTDQTPVW QRIFWAGMMG LVAIALLLAG GLSALQTVTI
ASALPFSMIL LVSIYGLLKA LRIDAHKRDS QTTTTIAPTA ARNPISWQRR LRNIAYFPKR
SQVKRFVGEV VQPAMALVEA ELAKQNTTSS IDDSQDDRIR FEVDLGEDLN FVYEVRLRAY
IQPAFALAGL KDEERDEEHK YYRGEVHLKE GGQDYDVMGW TQEQIIHDIL DQYEKHLHFL
HLVR
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