| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_1279 |
|---|
| Symbol | tolB |
|---|
| ID | 5604787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | + |
|---|
| Start bp | 1405700 |
|---|
| End bp | 1406992 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640936806 |
|---|
| Product | translocation protein TolB |
|---|
| Protein accession | YP_001477511 |
|---|
| Protein GI | 157369522 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000335238 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000521877 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAGG CATTTCGAGT AGCGCTAGGT TTTTTAATAC TGTGGGCATC CGTTCTTCAC
GCGGAAGTTC GCATTGAAAT CACCCAAGGG GTCGACTCCG CTCGTCCGAT TGGCGTGGTG
CCGTTTAAAT GGGCGGGCCC AGGCACGCCT CCGGAAGATA TTGGCAAAAT TGTCGGCGCA
GACCTGCGCA ACAGCGGCAA ATTCAACCCA ATTGACGTGG CGCGTATGCC TCAGCAACCT
ACCACCGCGT CTGAAGTGAC GCCGGCGGCC TGGACTGCAT TGGGCATTGA CGCGGTCGTG
GTCGGCCAGG TGCAACCTGG TGCAGACGGC GGCTACCTGA TCTCTTATCA ACTGGTGGAC
ACTTCGGGCT CACCAGGCAC CGTTCTGGCG CAGAACCAGT ATAAAGTGAC CAAACAATGG
TTGCGTTATT CTGCTCACAC CGCCAGTGAC GAAGTGTTTG AGAAGCTGAC CGGTATCAAG
GGCGCATTCC GTACCCGTAT CGCATACGTA GTGCAGACCA ACGGCGGGAA ATTCCCGTAT
GAGCTGCGCG TAGCGGATTA CGACGGCTAC AACCAGTTTA CGGTACATCG TTCACCAGAA
CCTCTGATGT CCCCGGCCTG GTCGCCGGAC GGCAGCAAAC TGGCGTACGT AACCTTTGAA
AGCGGCCGTT CTGCGCTGGT TGTGCAGACC CTGGCTAACG GTGCTATCCG TCAGATCGCT
TCGTTCCCGC GTCACAACGG GGCGCCGGCG TTCTCACCGG ACGGCAGCCG CCTGGCGTTT
GCGCTGTCTA AAAGCGGTAG CCTGAACCTG TACGTGATGA ATCTTGGCTC TGGCCAGATC
ACCCAAATCA CCGACGGGCG CAGCAACAAT ACCGAACCGA CCTGGTTCCC GGATGGGCAG
TCTCTGGCCT ATACCTCCGA TCAGGGCGGC AGACCACAGA TTTATAAAGT CAGTGCCAGT
GGCGGTGCGT CACAGCGTCT GACATGGGAA GGCTCTCAGA ATCAGGATTC TGAAGTCAGC
TCTGATGGTA AATTCCTGGT GATGGTGAGC TCTAACAGTG GTGCTCAGCA TATCGCCAAA
CAAGATCTCG GATCGGGGGC GGTTCAAGTT TTGACCGGCA CCTTCCTGGA CGAAACGCCT
AGTATTGCGC CAAATGGCAC CATGGTGATC TATAGCTCCA CGCAAGGTAT GGGCTCCGTG
CTGCAACTGG TATCGACTGA TGGGCGTTTT AAAGCGCGTC TTCCGGCAAC TGATGGACAG
GTCAAATTCC CTGCCTGGTC GCCGTATCTG TGA
|
|---|
| Protein sequence | MKQAFRVALG FLILWASVLH AEVRIEITQG VDSARPIGVV PFKWAGPGTP PEDIGKIVGA
DLRNSGKFNP IDVARMPQQP TTASEVTPAA WTALGIDAVV VGQVQPGADG GYLISYQLVD
TSGSPGTVLA QNQYKVTKQW LRYSAHTASD EVFEKLTGIK GAFRTRIAYV VQTNGGKFPY
ELRVADYDGY NQFTVHRSPE PLMSPAWSPD GSKLAYVTFE SGRSALVVQT LANGAIRQIA
SFPRHNGAPA FSPDGSRLAF ALSKSGSLNL YVMNLGSGQI TQITDGRSNN TEPTWFPDGQ
SLAYTSDQGG RPQIYKVSAS GGASQRLTWE GSQNQDSEVS SDGKFLVMVS SNSGAQHIAK
QDLGSGAVQV LTGTFLDETP SIAPNGTMVI YSSTQGMGSV LQLVSTDGRF KARLPATDGQ
VKFPAWSPYL
|
|---|
| |