Gene Spro_1078 details

Gene Information

• Locus tag: Spro_1078
• ID: 5606888
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Serratia proteamaculans 568
• Kingdom: Bacteria
• Replicon accession: NC_009832
• Strand: -
• Start bp: 1185731
• End bp: 1187596
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 640936597
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_001477310
• Protein GI: 157369321
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 4
• Fosmid unclonability p-value: 0.000138004
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAGTCTTG ATATAGCCAA ATACCCGACC TTGGCGCTAG CGGAAAATCC GGATGAACTC 
CGTTCGCTGC CAAAAGAGAG CCTACCGAAG CTGTGTGACG AACTTCGGCA ATACCTGCTG 
GACAGCGTCA GCCGCTCCAG CGGCCACTTT GCCTCCGGGC TGGGTACCGT CGAACTGACG 
GTGGCATTGC ACTATGTTTA CCAAACCCCC TTCGATCATC TGGTATGGGA CGTTGGCCAC 
CAGGCCTACC CGCATAAAAT TCTGACCGGT CGTCGCGACA AAATCGCCAC CATCCGCCAG 
AAAAATGGCC TGCACCCTTT CCCGTGGCGG GCAGAAAGTG AATACGACGT CCTGTCGGTC 
GGTCATTCTT CCACCTCGAT CAGTGCCGGT CTCGGCATGG CGGTAGCCGC TGCGCGTGAA 
GGCAAAAATC GCCGAACGGT CTGCGTGATC GGCGATGGCG CGATCACTGC CGGCATGGCG 
TTTGAAGCCA TGAACCACGC CGGTGACATC GATCCGGATA TGCTGGTGGT GCTGAACGAT 
AACGAAATGT CGATTTCGGA AAACGTCGGC GCGCTGAACA ACCATCTGGC GCAGTTGCTG 
TCCGGCAAGC TCTACTCCAC CCTGCGTGAG GGCGGTAAAA AAGTGCTGTC CGGCCTGCCG 
CCGATTAAAG AGCTGGTCAA ACGCACCGAA GAACACCTGA AAGGCATGGT GGTACCGGGC 
ACGCTGTTCG AAGAGCTGGG CTTTAACTAT ATCGGCCCGG TCGACGGCCA CGATGTCCAG 
GGGCTGGTTG CCACGCTGAA AAACATGCGT GACCTGAAAG GCCCGCAACT GCTGCACATC 
ATGACCAAAA AAGGCCGTGG TTACGCCCCG GCGGAAAAAG ACCCGATCAG CTTCCACGCG 
GTGCCGAAAT TCGATCCGGC CAGCGGTACC CTGCCGAAAA GCGCCGGCGG CCTGCCAACT 
TATTCAAAAG TTTTTGGCGA CTGGCTGTGT GAAACCGCCG CCAAGGACAG CTCGCTGATG 
GCCATCACCC CGGCCATGCG TGAAGGCTCG GGCATGGTGC AGTTCTCCCG TGACTATCCG 
CAGCAATATT TTGACGTGGC GATTGCCGAA CAGCACGCGG TGACCTTCGC TGCCGGTTTG 
GCCATTGGCG GTTATAAGCC GGTGGTGGCG ATTTATTCCA CCTTCCTGCA GCGCGCTTAC 
GATCAGTTGA TCCACGACGT CGCCATTCAA AAGCTGCCGG TGATGTTTGC CATCGATCGC 
GGCGGTATTG TCGGCGCTGA CGGCCAGACT CACCAGGGAG CCTTTGACCT GTCATTTATG 
CGTTGCATCC CGACCATGGT GATCATGACG CCAAGTGATG AAAACGAATG CCGTCAGATG 
CTGTACACCG GCTATCACTA TAACGAAGGC CCAAGCGCCG TGCGTTATCC TCGTGGCAAT 
GGTACCGGTG CACCGCTGGA ACCTCTCAAC TCTCTGCCGA TCGGCAAAGG CGTTGTCCGT 
CGTGAAGGTG AAAAGCTGGC GATCCTGAAT TTCGGCACAT TGCTGCCGGA AGCCGCGCAG 
GTAGCGGAAA CGCTCAACGC AACGCTGGTG GATATGCGCT TTGTGAAGCC ACTGGACGAA 
CAGCTGATAC TGGAACTGGC AGCCAGCCAC GACGCACTGG TCACGCTGGA AGAGAACGCC 
ATTATGGGCG GTGCCGGCAG CGGCGTGAAC GAGTTGCTGA TGGCCAGGCG CCGTGTGGTA 
CCGGTGCTGA ATATCGGCCT GCCGGACTTC TTTGTCTCCC AGGGTAGCCA GGAAGAAGTC 
CGTAGCGATC TCGGCCTGGA CGCCGCCGGC ATCCAGCGGC AAATTGAGGT CTGGCTGGCG 
CAATAA 

 

Protein sequence

MSLDIAKYPT LALAENPDEL RSLPKESLPK LCDELRQYLL DSVSRSSGHF ASGLGTVELT 
VALHYVYQTP FDHLVWDVGH QAYPHKILTG RRDKIATIRQ KNGLHPFPWR AESEYDVLSV 
GHSSTSISAG LGMAVAAARE GKNRRTVCVI GDGAITAGMA FEAMNHAGDI DPDMLVVLND 
NEMSISENVG ALNNHLAQLL SGKLYSTLRE GGKKVLSGLP PIKELVKRTE EHLKGMVVPG 
TLFEELGFNY IGPVDGHDVQ GLVATLKNMR DLKGPQLLHI MTKKGRGYAP AEKDPISFHA 
VPKFDPASGT LPKSAGGLPT YSKVFGDWLC ETAAKDSSLM AITPAMREGS GMVQFSRDYP 
QQYFDVAIAE QHAVTFAAGL AIGGYKPVVA IYSTFLQRAY DQLIHDVAIQ KLPVMFAIDR 
GGIVGADGQT HQGAFDLSFM RCIPTMVIMT PSDENECRQM LYTGYHYNEG PSAVRYPRGN 
GTGAPLEPLN SLPIGKGVVR REGEKLAILN FGTLLPEAAQ VAETLNATLV DMRFVKPLDE 
QLILELAASH DALVTLEENA IMGGAGSGVN ELLMARRRVV PVLNIGLPDF FVSQGSQEEV 
RSDLGLDAAG IQRQIEVWLA Q