| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_1072 |
|---|
| Symbol | ribD |
|---|
| ID | 5606850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | + |
|---|
| Start bp | 1180937 |
|---|
| End bp | 1182046 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640936591 |
|---|
| Product | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase |
|---|
| Protein accession | YP_001477304 |
|---|
| Protein GI | 157369315 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.790808 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000447237 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCATAACG ACGAGTTTTA TATGGCTCGC GCCTTTGAGC TGGCGCGACT GGGGCGTTTT
ACTACCGCAC CGAATCCCAA TGTCGGCTGC GTTATCGTGC GCGATGGCGA AATCGTCGGT
GAGGGTTACC ATCTGCGCGC CGGTGAACCG CATGCGGAAG TTCATGCGCT GCGCATGGCG
GGTGAAAAGG CGCGTGGCGC CACCGCTTAT GTCACGCTGG AACCCTGTAG CCACCATGGC
CGCACGCCGC CCTGTGCCGA TGCGTTGGTC GCCGCTGGCG TAGCCCGTGT GGTTGCGGCG
ATGCAGGATC CCAACCCGGA AGTTGCCGGA CGTGGCCTGT ATAAACTGCA GCAGGCGGGG
TTGGATGTAC GTCACGGTTT GATGCTGGCC GAAGCTGAAT CGGTAAATCT GGGCTTCCTC
AAACGGATGC GCACCGGTTT CCCTTATGTG CAACTGAAGC TCGGCGCCTC ACTCGATGGC
CGCACGGCGA TGGCTTCCGG CGAAAGCCAA TGGATCACTT CACCGCAGGC ACGTCAGGAC
GTGCAGCGTC TGCGAGCGCA AAGCGCCGCT ATTCTCAGCA CCAGTGCTAC CGTATTGGCT
GACGATCCGT CACTGACGGT ACGCTGGGAT GAACTGGACG CCGAAACGCA AAGCATTTAC
CCGCGTGAAA ACCTGCGTCA ACCGTTGCGC ATTATTCTGG ATAGCCAAAA TCGCGTCACC
CCACAGCACC GGGTGGTACA ACAACCGGGG CAAACCTGGC TGGCGCGCCT GCAGCCGGAT
GAGCAAATTT GGCCGCAGGA TGTCGAGCAA CTGACCTTTC CGGCGCACGG CGGTGGCGTT
GATCTGGTGG TGATGATGAT GCAACTGGCG AAACGCCAGG TGAATTCCAT CTGGGTCGAG
GCCGGCGCGC AGTTGGCCGG TGCCTTGTTG CAGGCCGGGC TGGTTGATGA GCTCATTTTG
TATATCGCGC CAAAACTGTT GGGTGATAAT GGCCGCGGTT TGTGCCATTT GCCGGGCCTT
GAACACCTGA CCGATGCACC GGAATTCGTC TTCAGCGAAG TGCGGCAAAT CGGCCCTGAT
TTGCGGCTGC GGCTGAAAGC AAAATACTGA
|
|---|
| Protein sequence | MHNDEFYMAR AFELARLGRF TTAPNPNVGC VIVRDGEIVG EGYHLRAGEP HAEVHALRMA
GEKARGATAY VTLEPCSHHG RTPPCADALV AAGVARVVAA MQDPNPEVAG RGLYKLQQAG
LDVRHGLMLA EAESVNLGFL KRMRTGFPYV QLKLGASLDG RTAMASGESQ WITSPQARQD
VQRLRAQSAA ILSTSATVLA DDPSLTVRWD ELDAETQSIY PRENLRQPLR IILDSQNRVT
PQHRVVQQPG QTWLARLQPD EQIWPQDVEQ LTFPAHGGGV DLVVMMMQLA KRQVNSIWVE
AGAQLAGALL QAGLVDELIL YIAPKLLGDN GRGLCHLPGL EHLTDAPEFV FSEVRQIGPD
LRLRLKAKY
|
|---|
| |