| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_1063 |
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| Symbol | secD |
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| ID | 5606770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Serratia proteamaculans 568 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009832 |
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| Strand | + |
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| Start bp | 1169432 |
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| End bp | 1171279 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640936582 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001477295 |
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| Protein GI | 157369306 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00256647 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCTAAACC GTTATCCTTT GTGGAAGTAT CTGATGCTGA TCGTAGTGAT CATCATCGGT
CTGCTTTATG CGCTTCCCAA CCTCTATGGT GAGGATCCGG CTGTACAGAT CACTGGCGCG
CGCGGTGTCG CCGCCAGTGA AACTACGCTG GACCAAGTCC GTACCGTATT AGAAAAAGAC
AAGATCGCGA GCAAGTCGAT TGCGCTGGAA AATGGCGCCA TCCTGGCTCG CTTTAGCAAT
CCTGATATTC AGCTGCGCGC GCGTGAAGCC TTAATGGCTG AGCTGGGCGA CAAGTTCGTG
GTGGCGCTGA ACCTGGCCCC GGCCACGCCG GCCTGGTTGG CCATGCTGGG CGCCGAACCG
ATGAAACTCG GTCTGGACCT GCGCGGTGGC GTGCACTTCC TGATGGAAGT GGACATGGAC
ACTGCGCTGA GCAAACTGCA GGAACAGACC ATGGACACCC TGCGCAGCGA GCTGCGTGAA
AAGGGCATTC CTTATGCGTC TATCCGCAAG CTGGACAACA ACGGCGTGGA AGTGCGTTTC
CGTGACGATG CTGCCCGCGA TCAGGCCATC AGCTACCTTG GCCCACGCCA ACGTGACATG
GTGTTCTCTG CCAACGGCAC CAACACCCTG AAAGCCAACC TGACGGATGC CCGCCTGAGC
GAAGCGCGTG AGTATGCGGT GCAGCAGAAC ATCACTATCC TGCGTAACCG TGTTAACCAG
CTCGGCGTTG CCGAACCGCT GGTACAACGC CAGGGTTCTG ACCGCATCGT GGTCGAACTG
CCGGGTATTC AGGATACCGC ACGTGCCAAA GAGATCCTGG GCGCTACCGC GACGCTGGAA
TTCCGTCTGG TTAACACCAA TGCGGATACC ACTGCGGCAG CCAATGGCCG TGTGCCGGGT
GACTCCGAAG TAAAAGACAC CCGCGAAGGC CAGCCGGTTG TGCTGTACAA GCGCGTGATC
CTGACCGGTG ACCACATTAC CGACTCCACC TCCAGCACCG ACGAATACAA CCAGCCGCAG
GTTAATATCT CGCTGGACAG TACCGGCGGT ACCGCGATGT CCAACTTCAC CAAGGACAAT
ATCGGCAAGC CGATGGCGAC CCTGTTTGTG GAGTACAAGG ACAGCGGCAA GAAAGACGCT
AACGGCCGTG CAGTCCTGGT GAAACAGGAA GAAGTGATCA ACGTGGCGAA CATTCAGTCG
CGTCTGGGCA ACAGCTTCCG TATTACCGGC ATCGGCAACC CGAACGAAGC ACGTCAGCTC
TCGCTGCTGC TGCGCGCCGG TGCGCTGATT GCGCCTATCC AGATCGTGGA AGAGCGGACA
ATCGGTCCGA CCCTGGGGCA ACAGAATATC ACCCAAGGTC TGGAAGCCTG CTTGTGGGGC
CTGGTGGCAT CCATCGTGTT TATGGTGGTT TGGTACCGTA AGTTCGGCAT GATCGCTACC
ACGGCGCTGG TCGCCAACCT GGTGCTGATT GTCGGTGTCA TGTCCCTGTT GCCGGGGGCG
ACGCTGACCA TGCCGGGTAT TGCCGGTATC GTGCTGACGC TGGCGGTGGC GGTCGACGCC
AACGTACTGA TCAATGAACG TATCAAGGAA GAGCTGAAGA ACGGACGTTC CGTTCAGCAG
GCGATCCATG AAGGCTATAA AGGCGCGTTC TCCAGTATCG TTGATGCCAA CATCACCACC
CTGATCACCG CGATTATTCT GTACGCAGTG GGCACCGGTT CGATCAAAGG CTTTGCGATT
ACCACCGCAA TCGGTGTGGC GACGTCCATG TTCACCGCGA TTGTCGGTAC CCGTGCCATC
GTCAACCTGC TTTACGGCGG CAAACGCATT AACAAGCTGT CTATCTGA
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| Protein sequence | MLNRYPLWKY LMLIVVIIIG LLYALPNLYG EDPAVQITGA RGVAASETTL DQVRTVLEKD
KIASKSIALE NGAILARFSN PDIQLRAREA LMAELGDKFV VALNLAPATP AWLAMLGAEP
MKLGLDLRGG VHFLMEVDMD TALSKLQEQT MDTLRSELRE KGIPYASIRK LDNNGVEVRF
RDDAARDQAI SYLGPRQRDM VFSANGTNTL KANLTDARLS EAREYAVQQN ITILRNRVNQ
LGVAEPLVQR QGSDRIVVEL PGIQDTARAK EILGATATLE FRLVNTNADT TAAANGRVPG
DSEVKDTREG QPVVLYKRVI LTGDHITDST SSTDEYNQPQ VNISLDSTGG TAMSNFTKDN
IGKPMATLFV EYKDSGKKDA NGRAVLVKQE EVINVANIQS RLGNSFRITG IGNPNEARQL
SLLLRAGALI APIQIVEERT IGPTLGQQNI TQGLEACLWG LVASIVFMVV WYRKFGMIAT
TALVANLVLI VGVMSLLPGA TLTMPGIAGI VLTLAVAVDA NVLINERIKE ELKNGRSVQQ
AIHEGYKGAF SSIVDANITT LITAIILYAV GTGSIKGFAI TTAIGVATSM FTAIVGTRAI
VNLLYGGKRI NKLSI
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