| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_0828 |
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| Symbol | truD |
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| ID | 5603033 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Serratia proteamaculans 568 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009832 |
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| Strand | + |
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| Start bp | 921377 |
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| End bp | 922423 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640936339 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_001477062 |
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| Protein GI | 157369073 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.218757 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATGG CTAACCTGAC CTGGCTGCAT GGCCAGCCAC AGAGCACCGG CGTGTTGAAA
GCCAACCCGG AAGATTTTGT GGTGGTGGAA GACCTGGGCT TTGAGCCGGA CGGCGAAGGC
GAACATGTGC TGGTGAACAT CCGTAAGAAC GGTTGTAACA CTCAGTTTGT CGCCGATTAT
TTGGCGCGCT TTGCCGGTAT TCACGCCCGT TCTGTCAGTT ACGCGGGTCT GAAAGATCGC
CATGCGGTGA CCGAACAATG GTTCTGCCTG CATCTACCGG GCAAAGAGAC ACCTGATTTT
ACTCAGTTTT CACTGGAAGG CTGCGAAGTG CTGGCCAGCG CCCGCCACCT GCGCAAAATG
CGTATAGGCA CGCTAAAAGG CAATGCTTTC ACGCTGGTGC TGCGTCATAT TTCCGACCGT
CAGGATGTCG AACCGCGGCT GCAGGCGATT GCAACCGGCG GCGTGCCAAA CTATTTTGGC
AGCCAGCGCT TTGGTCGCGG CGGCAATAAC CTGGTGATGG CGCGCCGTTG GGCAAATGAT
GAGATCCGGG TTAAAGAACG CAGCAAGCGC AGTTTTTATC TTTCCGCCAG CCGCAGTGCG
CTGTTTAATT TGATTGCCAG CCGACGCTTG GCCAACCAGC AACAACATAC CGTGCTGGAA
GGCGATGCCT TACAGCTCAG TGGGCGTGGC AGTTGGTTTG TCGCCAAGCC GGAAGAGCTG
GAAGCGCTGC AACAGCGGCT GGATGCCGGC GAACTGATGA TTACCGCTCC TTTGCCGGGT
GACGGCGAAC CAGGCACCGC CGGTGAAGCG CTGAGTTTTG AACAGCAGTG CTTGCTGGAA
CAACCGGAAC TGATGGCGCT TTTAAAGCGT GAGCGTGTTG ATCCGGCCCG CCGTGCGTTG
CTGTTACAGC CAAAAAACAT GCACTGGGAA TGGTGGGATG ATGCCACCGT TGAACTGCGT
TTTTGGCTGC CGGCCGGCAG TTTCGCCACC AGCGTGGTGC GCGAAATTAT GCGGCAGGAC
AGTAGTGATG CGGATATTAG TGAGTAA
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| Protein sequence | MDMANLTWLH GQPQSTGVLK ANPEDFVVVE DLGFEPDGEG EHVLVNIRKN GCNTQFVADY
LARFAGIHAR SVSYAGLKDR HAVTEQWFCL HLPGKETPDF TQFSLEGCEV LASARHLRKM
RIGTLKGNAF TLVLRHISDR QDVEPRLQAI ATGGVPNYFG SQRFGRGGNN LVMARRWAND
EIRVKERSKR SFYLSASRSA LFNLIASRRL ANQQQHTVLE GDALQLSGRG SWFVAKPEEL
EALQQRLDAG ELMITAPLPG DGEPGTAGEA LSFEQQCLLE QPELMALLKR ERVDPARRAL
LLQPKNMHWE WWDDATVELR FWLPAGSFAT SVVREIMRQD SSDADISE
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