Gene Spro_0453 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpro_0453 
SymbolcpdB 
ID5603248 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSerratia proteamaculans 568 
KingdomBacteria 
Replicon accessionNC_009832 
Strand- 
Start bp501039 
End bp502991 
Gene Length1953 bp 
Protein Length650 aa 
Translation table11 
GC content56% 
IMG OID640935960 
Productbifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 
Protein accessionYP_001476689 
Protein GI157368700 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 
TIGRFAM ID[TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.309486 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.0372804 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAGC GTCCGCTGAC GTTGTCTGCC CTCGCTATGC TGGTGTGCGC CTCCGCACAA 
GCGGCAACGG TCGATCTGCG CGTGCTGGAA ACCACCGACC TGCACAGCAA CATGATGGAC 
TTCGATTACT ACAAGGATAA ACCGACCGAT AAATTCGGTC TGGTACGTAC CGCCAGCCTG 
ATTGAACAGG CCCGTCAGCA GGCAGCCAAT ACGGTGCTGG TGGACAACGG CGACATTATT 
CAGGGCAGCC CGCTCGGCGA TTATATGGCG GCCAAGGGCC TGAAACCCGG TGATGTACAC 
CCGGTGTATA AGGCGATGAA TACCCTGAAT TATGTGGTCG GCAATATCGG CAACCATGAG 
TTCAACTACG GGCTCGATTA CCTGAAAAAC GCCATTGCCG GTGCCAAATT CCCGTATATC 
AACGCCAACG TGATCGACGC TAAAACACAA AAACCCCTGT TCACTCCTTA CATTATCGTC 
GATACGCCGG TAAAAGACCG TGACGGCAAA GAACATAGTT TGCGCATCGG TTATATCGGC 
TTTGTGCCAC CACAAATCCT GGTGTGGGAT AAAGCCAATC TGCAGGGCAA GGTCACCGTT 
AACGACATCA CCGAAACGGC TAAACGTTAC GTGCCGGAAA TGCGCAAACA GGGCGCCGAT 
CTGGTGGTGG CTATCCCGCA CTCCGGCCTG TCCAGCGAGC CGTACAAGGC CATGGCGGAA 
AACTCGGTGT ACTACCTCAG CCAGGTACCG GGCATCGACG CCATCATGTT CGGCCACGCT 
CACGCCGTGT TCCCTAGCAA GGACTTCGCC AATATCAAAG GGGCTGACAT CGCACAGGGT 
ACGCTGAACG GCATCCCGGC AGTGATGCCG GGCCAGTGGG GCGATCATCT CGGCGTGGTC 
GACCTGCAAT TGAATAACGA CAGCGGCACC TGGAAAGTCA CGGCGGCCAA GGCGCAAGCT 
CGGCCGATTT ACGACAAAGA GAACAAGAAA TCGCTGGCGG CGGAAGACGC CAACCTGCTG 
AAAGTGCTGG CGGAAGATCA CAAAGGCACG CGAGATTTCG TCAGCAAGCC CGTCGGCAAG 
GCCGACGACA ACATGTACAG CTATCTGGCG CTGGTGCAGG ATGATCCGAC GGTGCAGATC 
GTCAATAACG CGCAAAAGGC CTACGTCGAG CACTATATTC AGGGCGATCC GGATCTGGCT 
GACCTGCCGG TGCTGTCAGC CGCGGCCCCG TTCAAGGTGG GCGGGCGCAA AAACGATCCG 
GCCAGCTTCG TTGAGGTGGA AAAAGGTCAG CTCACCTTCC GTAACGCTTC AGACCTCTAC 
CTTTATCCCA ACACACTGGT GGTGGTGAAA GCCAGCGGCA AAGAAGTGAA GGAATGGCTG 
GAGTGTTCCG CCGGTCAGTT CAACCAGATC GACGTCAACA GCAGCAAACC ACAAGGCCTG 
ATCAACTGGG ATGGTTTCCG CACCTATAAC TTCGATGTGA TTGACGGAGT CAATTATCAG 
GTCGACGTCA GCCAACCGGC GCGTTACGAC GGCGAATGCC AGTTAATTAA CGACAAGGCG 
CAGCGCATCA AGGAACTGAC GTTCAAAGGC AAACCGATCG ATCCAAACGC CACTTTCCTG 
GTTGCCACCA ATAACTACCG CGCCTACGGC GGCAAGTTTG CCGGCACCGG CGATCAACAC 
ATTGCTTTTG CTTCACCGGA TGAGAACCGT TCGGTACTGG CGGCTTATAT CAGCGCTGAA 
ACCAGGCAAC ACGGCGCAGT GAAGCCACAG GTGGATAATA ACTGGCGCCT GGCGACGTTC 
AGCAGCCCGC AGCCGCTGGA TATCCGCTTT GAAACCTCGC CGAGTGACAA AGCCAACGCG 
TTTATCAAAA CGCACGCCCA GTACCCGATG AAAGCTGAAG GGACAGACAG CATCGGCTTT 
GCGGTTTATC AGATTGATTT GCAGAAGAAA TAA
 
Protein sequence
MMKRPLTLSA LAMLVCASAQ AATVDLRVLE TTDLHSNMMD FDYYKDKPTD KFGLVRTASL 
IEQARQQAAN TVLVDNGDII QGSPLGDYMA AKGLKPGDVH PVYKAMNTLN YVVGNIGNHE 
FNYGLDYLKN AIAGAKFPYI NANVIDAKTQ KPLFTPYIIV DTPVKDRDGK EHSLRIGYIG 
FVPPQILVWD KANLQGKVTV NDITETAKRY VPEMRKQGAD LVVAIPHSGL SSEPYKAMAE 
NSVYYLSQVP GIDAIMFGHA HAVFPSKDFA NIKGADIAQG TLNGIPAVMP GQWGDHLGVV 
DLQLNNDSGT WKVTAAKAQA RPIYDKENKK SLAAEDANLL KVLAEDHKGT RDFVSKPVGK 
ADDNMYSYLA LVQDDPTVQI VNNAQKAYVE HYIQGDPDLA DLPVLSAAAP FKVGGRKNDP 
ASFVEVEKGQ LTFRNASDLY LYPNTLVVVK ASGKEVKEWL ECSAGQFNQI DVNSSKPQGL 
INWDGFRTYN FDVIDGVNYQ VDVSQPARYD GECQLINDKA QRIKELTFKG KPIDPNATFL 
VATNNYRAYG GKFAGTGDQH IAFASPDENR SVLAAYISAE TRQHGAVKPQ VDNNWRLATF 
SSPQPLDIRF ETSPSDKANA FIKTHAQYPM KAEGTDSIGF AVYQIDLQKK