| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_0438 |
|---|
| Symbol | |
|---|
| ID | 5604676 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | + |
|---|
| Start bp | 489571 |
|---|
| End bp | 492057 |
|---|
| Gene Length | 2487 bp |
|---|
| Protein Length | 828 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640935945 |
|---|
| Product | exoribonuclease R |
|---|
| Protein accession | YP_001476674 |
|---|
| Protein GI | 157368685 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.845016 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000698245 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGTCACAAG ATCCATTCCT GGAACGAGAA GCAGAAAAAT ATGAATCCCC AATCCCGAGC
CGTGAATTCA TTCTGGCCCA TCTGGCGAAA AGAGAAACGC CGGCCAGCCG CGAAGAGCTG
GCCAAAGAGC TGAATTTAAC CGGTGAAGAG CCGTTAGAAG CGTTGCGTCG CCGTTTGCGT
GCGATGGAAC GTGACGGTCA GTTAATATTT ACCCGCCGTC AGTGCTATGC GCTGCCGGAA
CGTCTCGATC TGCTGCGCGG TACCGTTATC GGCCACCGTG ATGGCTTTGG TTTCCTGCGT
ATTGAAGGCA GCAAAGACGA CCTGTATCTG TCAGCTGAGC AGATGAAAAT GGCAATCCAC
GGTGATGTGG TGCTGGCACA GGCAATGGCT GCAGATCGCA AGGGCCGCCG TGAAGCGCGT
ATCGTCCGTG TGCTGGTGCC GAAAACCAGC CAAATCGTCG GTCGCTTCTT TATGGATGCC
GGTACCGGCT TTGTGGTGCC GGATGATAGC CGCCTGAGCT TTGATATCCT GATCCCGGCC
GAAGCAGCCA GTGGCGCACG CATGGGCTTT ATGGTGGTGG TTGAGCTGAC CCAACGTCCG
ACCAGCCGCA CCAAGGCGGT GGGCAAGATC GTTGAGATCC TCGGCGATAA AATGGGCACC
AGCATGGCGG TGGATATCGC TCTGCGCACC CATGAGATCC CGCATGTTTG GCCGCCACAG
GTGGAAAAAC AGGTCGCCGA TCTCAGTGAA CAGGTACCTG AAGCCGCCAA GAAAGGCCGT
GTCGATCTGC GTCAGTTACC TTTGGTGACC ATTGACGGCG AAGACGCACG CGATTTCGAT
GACGCGGTTT ACTGCGAGAA AAAACGTGGC GGCGGTTGGC GCCTGTGGGT AGCCATTGCC
GACGTCAGCT ACTACGTGCG TCCGCGCACC GCGCTGGATG ATGAAGCGCG CAACCGTGCT
ACCTCGGTGT ACTTCCCATC GGAAGTCATC CCGATGCTGC CGGAAGTGCT GTCCAACGGC
CTGTGTTCGC TTAACCCGCA GGTTGACCGC CTGTGTATGG TGTGCGAGAT GACCATCTCC
GCCCAGGGGC GCCTGTCGAC GGCCAAATTC TATGAAGCGG TAATGAGCTC TCATGCCCGT
TTAACCTACA ACAAAGTCTG GCACATCTTG CAGGGCGATC AGGAGCTGCG TGAGCATTAT
CACCCGCTGG TTAAGCACCT GGAAGAACTG CACACAATGT ACAAGGTGTT GGATCAGGCG
CGCGCCGAAC GTGGCGGTAT TGCTTTCGAA ACCGAAGAAG CCAAGTTTAT CTTCAACGCC
GAACGTCGTA TTGAACGTGT TGAGCCAACG GTGCGTAACG ACGCCCACAA ACTGATCGAA
GAGTGCATGA TCATGGCGAA CGTTGCCGCG GCGCGCTTCG TTGAGAAGAA TAACGAGCCG
GCGCTGTTCC GCGTACATGA CCGTCCAAGC GACGATCACA TTACCGCCTT GCGCAGCGTG
CTGGGCGAAC TGGGTCTGAC GCTGGGCGGC GGGAACAAGC CGCAGCCGAA GGACTACGCC
ACCTTGATGG ATGAAGTGTC CGAACGTCCT GACCATGAAA TGCTGCAAAC CATGCTGCTG
CGTTCCATGA AGCAGGCGGT CTACGATCCG GAAAACCGGG GCCACTTTGG TCTGGCGCTG
GCTTCTTATG GCCACTTCAC CTCGCCGATC CGTCGTTATC CGGATCTGGC GATGCACCGC
GCAATCAAAT ACCAGCTGGC TAAAGAGCAC GGCGAGCCGA AAGAGCGCTG GACGCCGACC
GGTGGCTGGC ACAGCGAGTT TGAAGAAATG CTGCAGCTGG GCGAGCACTG TTCGATGGCC
GAGCGCCGCG CTGATGAAGC GACGCGTAAC GTTGCCGACT GGCTGAAATG CGACTTTATG
CAGGATCACG TTGGCGAAGT GTTCAGCGGT ATTATTGCCA GCGTGACCGG CTTTGGTTTC
TTCGTCCGTC TGAACGATCT GTTTATCGAC GGTCTGGTGC ACGTATCATC GCTGGATAAT
GACTATTATC GCTACGATAA TATCGGCCAG CGTCTGATTG GCGAATCCTC CGGCGTGGTT
TATCGCCTGG GCGATACGGT AGAGATCCGC GTTGAAGCGG TGCATATGGA CGAGCGTAAA
ATTGACTTCG CTTTGGTCTC CAGCACTCGC AAGCCGCGTG GTGAAGGCAA AACCGAACGC
GATCGCGCCA AAAATGGTGG CCAACGCACC CTGCGTGGCG GGGCTGGCGC AGGCCGCACT
TCCGCTCCGC GTAAACGTCG CGGCGGCAAA CCGCCCGCCA ATTTTGAGCC TGACAGCGCC
TTCCGTAAAG ACGAAGCCAA ACCCGCTGAC AAGGTGAAGA AAGACAAAAA GGCGAAAGCC
AAGAAAGTGT CCGACAAAAC CCGGAAAATA GCGTCGGCGA CCAAGGCCAA ACGCGCCGGC
AAGAAGAAAG GTGCTGAGCA GGCTTAA
|
|---|
| Protein sequence | MSQDPFLERE AEKYESPIPS REFILAHLAK RETPASREEL AKELNLTGEE PLEALRRRLR
AMERDGQLIF TRRQCYALPE RLDLLRGTVI GHRDGFGFLR IEGSKDDLYL SAEQMKMAIH
GDVVLAQAMA ADRKGRREAR IVRVLVPKTS QIVGRFFMDA GTGFVVPDDS RLSFDILIPA
EAASGARMGF MVVVELTQRP TSRTKAVGKI VEILGDKMGT SMAVDIALRT HEIPHVWPPQ
VEKQVADLSE QVPEAAKKGR VDLRQLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA
DVSYYVRPRT ALDDEARNRA TSVYFPSEVI PMLPEVLSNG LCSLNPQVDR LCMVCEMTIS
AQGRLSTAKF YEAVMSSHAR LTYNKVWHIL QGDQELREHY HPLVKHLEEL HTMYKVLDQA
RAERGGIAFE TEEAKFIFNA ERRIERVEPT VRNDAHKLIE ECMIMANVAA ARFVEKNNEP
ALFRVHDRPS DDHITALRSV LGELGLTLGG GNKPQPKDYA TLMDEVSERP DHEMLQTMLL
RSMKQAVYDP ENRGHFGLAL ASYGHFTSPI RRYPDLAMHR AIKYQLAKEH GEPKERWTPT
GGWHSEFEEM LQLGEHCSMA ERRADEATRN VADWLKCDFM QDHVGEVFSG IIASVTGFGF
FVRLNDLFID GLVHVSSLDN DYYRYDNIGQ RLIGESSGVV YRLGDTVEIR VEAVHMDERK
IDFALVSSTR KPRGEGKTER DRAKNGGQRT LRGGAGAGRT SAPRKRRGGK PPANFEPDSA
FRKDEAKPAD KVKKDKKAKA KKVSDKTRKI ASATKAKRAG KKKGAEQA
|
|---|
| |