Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spro_0277 |
Symbol | rpoB |
ID | 5606964 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Serratia proteamaculans 568 |
Kingdom | Bacteria |
Replicon accession | NC_009832 |
Strand | + |
Start bp | 313487 |
End bp | 317515 |
Gene Length | 4029 bp |
Protein Length | 1342 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640935776 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001476515 |
Protein GI | 157368526 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.274525 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0126314 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTTACT CCTATACCGA GAAAAAACGT ATTCGTAAGG ATTTTGGTAA GCGTCCACAA GTTTTGGACA TACCATATCT CCTTTCTATC CAGCTTGATT CGTTCCAGAA GTTTATCGAG CAAGATCCAG AAGGGCAGCA CGGCCTAGAA GCCGCCTTCC GTTCTGTTTT CCCTATCCAG AGCTACAGTG GCAATTCGGA GCTGCAATAC GTTAGCTACC GTCTTGGTGA GCCGGTCTTC GACGTCAAAG AGTGCCAGAT CCGTGGTGTG ACGTTCTCTG CACCGCTGCG CGTAAAACTG CGCCTGGTAA TCTATGAGCG CGAAGCTCCG GAAGGCACGG TCAAAGACAT CAAGGAACAA GAAGTCTATA TGGGCGAAAT TCCGCTCATG ACCGAAAACG GCACCTTTGT GATCAACGGT ACTGAGAGGG TTATCGTATC TCAGCTTCAC CGTAGTCCTG GCGTATTCTT TGACAGCGAT AAGGGTAAAA CCCACTCTTC GGGTAAAGTG CTGTATAACG CACGTATCAT CCCTTACCGC GGTTCATGGC TGGATTTCGA GTTTGACCCG AAAGACAACC TGTTTGTGCG TATTGACCGT CGCCGTAAAT TGCCTGCGAC CATCATTCTG CGTGCATTGA ACTACACCAC TGAGCAGATC CTTGACCTGT TCTTTGCGAA AGTAGTTTAC GAGATCCGTG ATAACAAGCT GCAGATGGAG CTGGTTCCAG AACGTCTGCG TGGTGAGACT GCTTCGTTTG ATATCGAAGC CAACGGCAAG ATCTACATTG AGAAAGGCCG TCGTATCACC GCTCGTCATA TCCGTCAGCT CGAAAAAGAC GAAATTCAGA GTATTGAAGT ACCGGTTGAG TACATCGCGG GCAAAGTGGT CGCGAAGGAC TATATCGATA CCAATACCGG TGAGCTGATC TGCGCAGCCA ACATGGAGCT GTCGCTGGAT CTGCTGGCCA AACTGAGCCA GTCAGGCCAC AAGCGTATCG AAACGCTGTT CACCAACGAT CTGGACCACG GTGCGTACAT CTCTGAGACT GTACGTGTCG ATCCAACCAG CGATCGTTTG AGCGCACTGG TAGAAATCTA CCGCATGATG CGTCCTGGTG AGCCGCCAAC GCGCGAAGCT GCTGAAAACC TGTTTGAGAA CTTGTTCTTC TCTGAAGACC GCTACGATCT GTCTGCGGTT GGTCGTATGA AGTTCAACCG TTCTCTGCTG CGTGACGAGA TCGAAGGTTC GGGCATCCTG AGCAAAGACG ACATCATTGA AGTGATGAAG AAGCTCATCG GTATCCGTAA CGGTAAAGGC GAAGTGGACG ATATCGACCA CTTGGGCAAC CGTCGTATCC GTTCCGTCGG CGAAATGGCT GAGAACCAGT TCCGTGTAGG TCTGGTGCGT GTTGAGCGTG CGGTTAAAGA ACGTCTGTCC CTGGGCGATC TGGACACCCT GATGCCACAG GACATGATCA ACGCCAAGCC GATTTCGGCG GCGGTGAAAG AGTTCTTCGG CTCCAGCCAG CTGTCTCAGT TTATGGACCA GAACAACCCG TTGTCCGAGA TTACGCACAA ACGTCGTATC TCTGCATTGG GCCCAGGCGG TCTGACCCGT GAACGTGCCG GCTTTGAAGT TCGAGACGTA CACCCGACTC ACTACGGTCG CGTGTGCCCA ATCGAAACGC CGGAAGGTCC AAACATCGGT CTGATCAACT CCTTGTCCGT GTACGCACAG ACCAACGAGT ATGGCTTCCT GGAAACTCCG TACCGCCGCG TGCGTGACGG CCTGGTTACC GATGAAATCA ACTATCTGTC TGCTATTGAA GAAGGCAACT TCGTTATCGC TCAGGCGAAC TCCAACCTGG ATGATGACGG CCGCTTCGTA GAAGACCTGG TCACCTGTCG TAGCAAAGGC GAATCAAGCC TGTTCAGCCG CGACCAGGTT GACTATATGG ACGTATCAAC CCAGCAGGTT GTCTCCGTTG GTGCTTCACT GATTCCATTC CTGGAACACG ATGACGCCAA CCGTGCATTG ATGGGTGCGA ACATGCAACG TCAGGCGGTT CCAACCTTGC GTGCTGACAA GCCGCTGGTA GGTACCGGTA TGGAACGTGC TGTAGCTGTT GACTCCGGTG TTACTGCCGT AGCTCGACGT GGCGGTGTGA TCCAGTACGT GGATGCTTCC CGTATCGTTA TTAAAGTTAA CGAAGACGAG ATGCTCGCGG GCGAAGCAGG TATCGATATT TATAACCTGA CCAAGTACAC CCGTTCTAAC CAGAACACCT GTATCAACCA GATGCCGTGT GTGAATCTGG GTGAGCCAAT CGAGCGCGGC GACGTGCTGG CAGATGGCCC ATCCACTGAC CTGGGTGAAC TGGCGCTGGG CCAGAACATG CGCGTGGCAT TCATGCCATG GAACGGCTAC AACTTCGAAG ACTCCATCTT GGTGTCCGAG CGTGTCGTTC AGGAAGATCG CTTCACTACC ATCCACATCC AGGAACTGGC ATGTGTGTCT CGCGACACCA AGTTGGGGCC TGAAGAGATC ACTGCCGACA TCCCTAACGT GGGTGAAGCT GCGCTCTCCA AACTGGATGA GTCCGGTATC GTGTATATCG GTGCTGAAGT GACCGGTGGC GACATTCTGG TTGGTAAGGT AACACCAAAA GGTGAAACCC AGCTGACGCC AGAAGAGAAG CTGCTGCGTG CGATCTTCGG TGAGAAGGCG TCTGACGTTA AAGACTCCTC TCTGCGCGTA CCAAACGGCG TTTCCGGTAC GATTATCGAC GTGCAGGTCT TTACCCGCGA TGGCGTGGAA AAAGACAAGC GTGCGTTGGA AATCGAAGAG ATGCAGCTGA AGCAGGCGAA AAAAGACCTG ACTGAAGAAC TGCAGATCCT GGAAGCTGGT CTGTTCGCAC GTATCCATGC GGTGCTGGTT GCCGGCGGTG TTGAAGCTGA AAAGCTGAGC AAACTGCCAC GCGATCGCTG GCTGGAACTG GGCCTGACCG ACGAAGAAAA GCAAAACCAG CTGGAACAGT TGGCAGAGCA GTACGACGAG CTGAAATCCG ACTTCGAGAA GAAGCTGGAT GCCAAGCGTC GTAAGATCAC CCAGGGCGAT GATCTGGCAC CAGGCGTGCT GAAAATCGTT AAGGTTTATC TGGCTGTTAA GCGTCAGATC CAACCGGGTG ACAAGATGGC AGGCCGCCAC GGTAACAAGG GTGTTATCTC CAAGATCAAC CCGATCGAAG ATATGCCTTA CGATGAAAAC GGCACGCCGG TTGACATCGT ACTGAACCCG TTGGGCGTAC CATCACGTAT GAACATCGGT CAGATCCTGG AAACCCACTT GGGTATGGCT GCGAAAGGCA TTGGTGAGAA GATCAACCAA ATGCTGAAGC AGCATCAGGA AGTGGCCAAG CTGCGTGAGT TCATTCAGAA GGCTTACGAT CTGGGCGACG ATGTCTGCCA GAAAGTTGAC CTGAACACCT TCACCGACGA CGAAGTACTG CGTCTGGCAG AGAACCTGAA AAAAGGTATG CCAATCGCAA CGCCGGTGTT TGATGGTGCG AAAGAGAGTG AAATCAAGCA ATTGCTGGAA ATGGGCGGGA TCCCAACTTC GGGTCAGATT ACGCTGTTCG ATGGCCGTAC CGGTGAGCAA TTTGAGCGCC AGGTTACCGT TGGCTATATG TACATGCTGA AACTGAACCA CTTGGTTGAC GATAAAATGC ACGCCCGTTC AACCGGTTCT TACAGCTTGG TTACTCAGCA GCCGCTGGGT GGTAAGGCGC AGTTCGGTGG TCAACGCTTC GGTGAGATGG AAGTGTGGGC ACTGGAAGCA TACGGCGCAG CTTATACCCT GCAGGAAATG CTCACCGTTA AGTCGGATGA CGTTAACGGC CGTACCAAGA TGTACAAAAA CATCGTGGAT GGCGATCACC GCATGGAACC AGGCATGCCG GAGTCCTTCA ACGTACTGTT GAAAGAAATC CGCTCGCTCG GTATCAACAT CGAACTGGAA GGCGAGTAA
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Protein sequence | MVYSYTEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFQKFIE QDPEGQHGLE AAFRSVFPIQ SYSGNSELQY VSYRLGEPVF DVKECQIRGV TFSAPLRVKL RLVIYEREAP EGTVKDIKEQ EVYMGEIPLM TENGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARIIPYR GSWLDFEFDP KDNLFVRIDR RRKLPATIIL RALNYTTEQI LDLFFAKVVY EIRDNKLQME LVPERLRGET ASFDIEANGK IYIEKGRRIT ARHIRQLEKD EIQSIEVPVE YIAGKVVAKD YIDTNTGELI CAANMELSLD LLAKLSQSGH KRIETLFTND LDHGAYISET VRVDPTSDRL SALVEIYRMM RPGEPPTREA AENLFENLFF SEDRYDLSAV GRMKFNRSLL RDEIEGSGIL SKDDIIEVMK KLIGIRNGKG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVKERLS LGDLDTLMPQ DMINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEITHKRRI SALGPGGLTR ERAGFEVRDV HPTHYGRVCP IETPEGPNIG LINSLSVYAQ TNEYGFLETP YRRVRDGLVT DEINYLSAIE EGNFVIAQAN SNLDDDGRFV EDLVTCRSKG ESSLFSRDQV DYMDVSTQQV VSVGASLIPF LEHDDANRAL MGANMQRQAV PTLRADKPLV GTGMERAVAV DSGVTAVARR GGVIQYVDAS RIVIKVNEDE MLAGEAGIDI YNLTKYTRSN QNTCINQMPC VNLGEPIERG DVLADGPSTD LGELALGQNM RVAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELACVS RDTKLGPEEI TADIPNVGEA ALSKLDESGI VYIGAEVTGG DILVGKVTPK GETQLTPEEK LLRAIFGEKA SDVKDSSLRV PNGVSGTIID VQVFTRDGVE KDKRALEIEE MQLKQAKKDL TEELQILEAG LFARIHAVLV AGGVEAEKLS KLPRDRWLEL GLTDEEKQNQ LEQLAEQYDE LKSDFEKKLD AKRRKITQGD DLAPGVLKIV KVYLAVKRQI QPGDKMAGRH GNKGVISKIN PIEDMPYDEN GTPVDIVLNP LGVPSRMNIG QILETHLGMA AKGIGEKINQ MLKQHQEVAK LREFIQKAYD LGDDVCQKVD LNTFTDDEVL RLAENLKKGM PIATPVFDGA KESEIKQLLE MGGIPTSGQI TLFDGRTGEQ FERQVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTKMYKNIVD GDHRMEPGMP ESFNVLLKEI RSLGINIELE GE
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