| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_0220 |
|---|
| Symbol | rsmD |
|---|
| ID | 5606078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 247712 |
|---|
| End bp | 248332 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640935711 |
|---|
| Product | 16S rRNA m(2)G966-methyltransferase |
|---|
| Protein accession | YP_001476458 |
|---|
| Protein GI | 157368469 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0742] N6-adenine-specific methylase |
|---|
| TIGRFAM ID | [TIGR00095] RNA methyltransferase, RsmD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0403675 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGAA TATCGCCACG GGCGTCGGCA AAAAAACCGC CTCAGGCTGC GGCCGGGCAG
ATCCGTATTA TCGGCGGCCA ATGGCGCGGA CGGAAACTGC CGGTGCCAAA TAGCCCTGGG
CTACGTCCAA CCACCGATCG CGTCCGTGAA ACCCTGTTCA ACTGGCTGGC CCCGGTGATC
CAGGGCGCAC GCTGCCTGGA CTGTTTCGCC GGTAGCGGCG CACTCGGCCT GGAAGCGCTG
TCCCGCTATG CCGGCAGCGT TACGCTGTTG GAGTTTGAAC GCCCGGTGGC GCAGCAGTTG
GAAAAGAATC TGGCGCTGCT GCAAGGCAAA GGCCATGTGG TCAACACCAA CGCGCTGAGC
TGGCTGGCGA ACAATGCCCA ACCGTTTGAC GTCGTGTTTC TCGATCCGCC TTTTCGCAAA
GGGCTGCTGG CGGAAACCGT CACGCTGCTG GAGCAGCAGG GCTGGCTGGC CGATGAGGCC
TGGATTTACG TAGAGGCCGA AGCCGAAAGC GCCGCCACCG ACGTTCCGGC CAACTGGCAG
CTACACCGTG AAAAAGTCGC CGGTCAGGTG GCTTACCGTC TTTATATTCG CTCTCAAGAG
AAAACCGACA ATGCTGATTA A
|
|---|
| Protein sequence | MTRISPRASA KKPPQAAAGQ IRIIGGQWRG RKLPVPNSPG LRPTTDRVRE TLFNWLAPVI
QGARCLDCFA GSGALGLEAL SRYAGSVTLL EFERPVAQQL EKNLALLQGK GHVVNTNALS
WLANNAQPFD VVFLDPPFRK GLLAETVTLL EQQGWLADEA WIYVEAEAES AATDVPANWQ
LHREKVAGQV AYRLYIRSQE KTDNAD
|
|---|
| |