| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_0053 |
|---|
| Symbol | avtA |
|---|
| ID | 5607290 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 52549 |
|---|
| End bp | 53871 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640935538 |
|---|
| Product | valine--pyruvate transaminase |
|---|
| Protein accession | YP_001476291 |
|---|
| Protein GI | 157368302 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3977] Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.100706 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCA TTGCGTCGGA AATTGACAGG CGGTATGGTG GGGAATTACC TGCTAAAAAT
AATACAGCTG CACCTATGAC TTTTTCACTT TTCGGCGACA AATTTACCCG TTACGCGGGC
ATTACCCGTT TAATGGATGA CCTGAACGAA GGCCTGCGCA CCCCCGGTGC CATCATGCTC
GGCGGCGGCA ATCCGGCGCA AATTCCAGAG ATGGAAAGCT ACTTCAAACA GCTGTGTCAG
GACATGCTCG ACCAGGGCAA ACTGACCGAG GCGCTGTGTA ACTATGACGG CCCACAGGGC
AAAGACGCCC TGCTGAAAGC ACTGGCCAAA TTGCTGCGCG ACGAGCTGGG CTGGCAGATC
TCTCCACAGA ATATTGCACT GACAAATGGC AGTCAGAGCG CGTTTTTCTA CTTGTTTAAC
CTGTTTGCCG GCCGCTATGC CGACGGCAGC CGCCGCCGCG TACTGTTCCC GCTGGCGCCG
GAATATATCG GCTATGCCGA TGCCGGGTTG GACGAAGGGC TGTTTGTCTC GGCCAAACCC
AACATCGAAT TGCTGCCAGA AGGCCAGTTC AAGTATCACG TTGATTTCGA ACACCTGAAC
ATCGGCGATG ATATCGGCAT GATCTGCGTA TCACGCCCGA CCAATCCGAC CGGCAACGTG
ATCACCGACG AAGAGCTGAT GAAGCTCGAC CGGTTGGCGC AGCAGCGCAA TATTCCGCTG
GTGATCGATA ACGCCTATGG CGTGCCCTTC CCCGGCATTA TCTTCAGCGA CGCAACGCCG
CTGTGGAACC CGAACATTAT TCTGTGCATG AGCCTGTCGA AACTCGGCCT GCCCGGTTCG
CGCTGCGGCA TAGTGATCGC CGATGAAAAG ACCATCAGCG CCCTGACCAA CATGAACGGC
ATCATTAGCC TGTCACCGGG CAGCATGGGG CCGGCGATGG CAACGGAAAT GATTGAACGC
GGCGATCTGC TGCGCCTGTC CAACGAGGTG ATCCGTCCGT TCTACAAACA GCGCGTCGAG
CACACTATCG AGATCATTCG CCGCTACCTG TCACCAGAGC GCTGCCTGAT CCATAAACCG
GAAGGGGCAA TTTTCCTCTG GCTGTGGTTC AAGGATCTGC CGATTACCAC TGAATTGCTG
TACCAGCGCC TGAAAAAACG TGGCGTGCTG ATGGTACCCG GCCACTATTT CTTCCCTGGG
CTGGAGCATG AATGGCCGCA TACCCATCAG TGCATGCGGA TGAACTACGT GCCGGATCCG
GAGAAAATTG AGCGTGGCGT GGCGATCCTG GCGGAAGAGA TCGAACGCGC GCACCAGGAA
TAA
|
|---|
| Protein sequence | MNRIASEIDR RYGGELPAKN NTAAPMTFSL FGDKFTRYAG ITRLMDDLNE GLRTPGAIML
GGGNPAQIPE MESYFKQLCQ DMLDQGKLTE ALCNYDGPQG KDALLKALAK LLRDELGWQI
SPQNIALTNG SQSAFFYLFN LFAGRYADGS RRRVLFPLAP EYIGYADAGL DEGLFVSAKP
NIELLPEGQF KYHVDFEHLN IGDDIGMICV SRPTNPTGNV ITDEELMKLD RLAQQRNIPL
VIDNAYGVPF PGIIFSDATP LWNPNIILCM SLSKLGLPGS RCGIVIADEK TISALTNMNG
IISLSPGSMG PAMATEMIER GDLLRLSNEV IRPFYKQRVE HTIEIIRRYL SPERCLIHKP
EGAIFLWLWF KDLPITTELL YQRLKKRGVL MVPGHYFFPG LEHEWPHTHQ CMRMNYVPDP
EKIERGVAIL AEEIERAHQE
|
|---|
| |