| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4501 |
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| Symbol | |
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| ID | 5612489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5505656 |
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| End bp | 5506300 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935478 |
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| Product | lysine exporter protein (LysE/YggA) |
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| Protein accession | YP_001476231 |
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| Protein GI | 157377631 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1280] Putative threonine efflux protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000135665 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGATCG ATCTCGCTAT ACTTCCCCTC TATTTAACCA CTGTCGTAGC CCTCTTACTG
ATCCCCGGGC CGGATATGTT ACTTATTGCC AGCTCCAGCT TAAGTTACGG ACGTAAGGTT
GGCGTTTTCG CCAGCTTAGG GAATGCGACA TCCGGATTAG TCTTGACCCT GTTGGCAGCG
ATGGGAGTCT CGGCATTGAT TGCCATGAAC CCTATGGCTC TGCAACTGCT GCGCCTGTTA
GGCGGAGCCT ATCTGTTAAA GATGGGTTGG GATTGCATGC GAGCCGGCCC GGTCGATGCA
CCGGAGGTAG CACAAGAAAA TAACCTGGCT AAAACTCTCT ATCGCCGCGC CGTATTCAGT
AATCTGCTCA ATCCTAAGGC CCTACTCTTC TTCGTACTGT TTTTACCTCA GTTTGTCTCT
TCTCAATTAA CGGCAAGCTC AGGTGAACAG ATGCTGGCAT TGGGATTACT GCTCAATGTG
ATGGGATTAC TGTTTAATCT GCTGCTGGTG GCCATGGTTG GAAGTCTTGG AAAACCACTA
CTTAAGAATG AGAAGTTCAG GGCTAATCAG AATAAGTTTA TGGGTGTCAT ATTCTTTGCG
TTAGCAATCT GGTTACTGGC GTCTCAAGTT CAAACCATGA GCTAA
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| Protein sequence | MMIDLAILPL YLTTVVALLL IPGPDMLLIA SSSLSYGRKV GVFASLGNAT SGLVLTLLAA
MGVSALIAMN PMALQLLRLL GGAYLLKMGW DCMRAGPVDA PEVAQENNLA KTLYRRAVFS
NLLNPKALLF FVLFLPQFVS SQLTASSGEQ MLALGLLLNV MGLLFNLLLV AMVGSLGKPL
LKNEKFRANQ NKFMGVIFFA LAIWLLASQV QTMS
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