Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4499 |
Symbol | |
ID | 5612536 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5502592 |
End bp | 5503392 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640935476 |
Product | 3-demethylubiquinone-9 3-O-methyltransferase |
Protein accession | YP_001476229 |
Protein GI | 157377629 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG2227] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase |
TIGRFAM ID | [TIGR01983] ubiquinone biosynthesis O-methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000000152328 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTAGATA AAAGCCACCT AAGCCCAAGC CTGAACAACG AAAGAAAATC AGCGCTGGAC ACCGAAAGAG AGATCGCTAA GTTCAATGCA TTAGCCAATG AGTGGCGCGA TCCTAAAGGG AAATTTAAGC ATGTCTTAGC CTTTAACCAG ACAAGGTTAA TCGCGATAGA GGATGCCATC GCCTACCATT TTGAAAGAGA TCTTAATCAA GATGTCCCCT TTAGCGATCT ATCACTGCTC GATATCGGTT GTGGTGCAGG CCTGCTTTGC GAACCATTAG CCTGGCAAGG TGCCAGAGTG AGTGGTATCG ATGCCAGTAG CCACAATATT GCCCTGGCAC GGCAGCATGC TAACAGTAAC TCGGTGACCG TAGACTATCG GCATTGTTTA GCTGAATCAC TATTAACCAC TGGAGAAAAA GAGAGAATAA CTGATACTAA TCAGTATGAT GTGGTACTCA ACACTGAGGT CATCGAACAT GTAGGCGATC AAGAAGCATT GATTCATACC TGTTGCCAAC TACTCAAACC GGGTGGATTG CTGATCATGG CTACACTAAA CCGCACAATA AAATCATACC TGATAGGCAT TATCGGCGCC GAATATCTGA TGCGTTACCT ACCCATAGGG ACTCACGATT GGCGTTTTTT CGTTACACCG AAAGAGATGG ATGCCATGAT AACCCCCCAC GGTTTACGTA CCGTCAAAGC TGAGGGAATG AGTTTTAACC CTTTGACTAA AAAGTGGAAA GTGACCAATA GCACCGACGT AAACTACCTG CTATATGCGA TAAAAAACTA A
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Protein sequence | MLDKSHLSPS LNNERKSALD TEREIAKFNA LANEWRDPKG KFKHVLAFNQ TRLIAIEDAI AYHFERDLNQ DVPFSDLSLL DIGCGAGLLC EPLAWQGARV SGIDASSHNI ALARQHANSN SVTVDYRHCL AESLLTTGEK ERITDTNQYD VVLNTEVIEH VGDQEALIHT CCQLLKPGGL LIMATLNRTI KSYLIGIIGA EYLMRYLPIG THDWRFFVTP KEMDAMITPH GLRTVKAEGM SFNPLTKKWK VTNSTDVNYL LYAIKN
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