| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4497 |
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| Symbol | |
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| ID | 5612534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5499562 |
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| End bp | 5501460 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935474 |
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| Product | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA |
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| Protein accession | YP_001476227 |
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| Protein GI | 157377627 |
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| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
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| COG ID | [COG0445] NAD/FAD-utilizing enzyme apparently involved in cell division |
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| TIGRFAM ID | [TIGR00136] glucose-inhibited division protein A |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000347331 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATTTTC ATGAAAGGTT CGATGTAATT GTTATCGGTG GTGGTCATGC CGGTACTGAA
GCTGCGTTAG CTGCAGCCAG AATGGGATCA AAAACCCTAC TGCTGACGCA TAACATCGAT
ACCTTAGGAC AAATGTCTTG TAATCCAGCC ATTGGTGGGA TCGGTAAAGG ACATTTGGTA
AAAGAGATTG ATGCCTTAGG CGGAGCAATG GCGATTGCCA CTGACTATGC AGGTATTCAG
TTTAGAACAC TTAATTCCAG CAAGGGCCCG GCAGTGCGAG CAACACGTGC TCAAGCAGAC
CGAGCTTTGT ACCGGGCTAA GATCCAGGAA ATACTTCAAA ACCAACCGAA TTTAAGACTA
TTCCAACAAG CTGTAGACGA TCTTATTGTT GAAAATGGCA AGGTAACTGG TGTGGTCACT
CAGATGGGAC TGGCCTTCGA AGCGCCGGCT GTCGTGTTAA CTGCAGGGAC TTTCCTTAGT
GGTAAAATTC ACATCGGGAT GCAGAATTAC AGCGGTGGTC GAGCAGGAGA TCCACCATCG
ATCGCGCTGG CAGATCGATT GCGTGAACTA CCGATCCGTA TTGGACGTTT GAAAACGGGT
ACACCACCAA GAATTGACGC GAATACCATT AACTTCGATC TGATGACTGA GCAGAAAGGT
GATACACCAT TGCCTGTCAT GTCGTTTATT GGTGATGTGA GTCATCATCC GCGTCAGGTC
TCCTGTTTCG TTACCCATAC TAACGAGCGA ACTCACGATA TTATTCGTGG TGGATTAGAT
CGAAGCCCCA TGTACTCGGG GATTATCGAA GGTGTCGGGC CGCGTTACTG CCCTTCTATC
GAAGATAAGA TCAATCGTTT TGCCGACAAG AGTTCACATC AGATATTTAT TGAGCCGGAA
GGCTTAAATA CTAATGAGAT CTACCCTAAC GGTATATCTA CAAGCTTACC TTTCGACGTT
CAATTAAATT TAGTACGTTC GATCAAGGGC ATGGAAAATG CCGAGATCAT TAGACCTGGT
TATGCCATCG AATATGATTA CTTCGATCCT CGAGATCTGA AAAACTCTTT AGAGACTAAA
TCTATTCAAG GTTTGTTCTT TGCCGGACAG ATCAACGGTA CGACCGGTTA TGAAGAAGCT
GGTGCTCAGG GATTATTGGC AGGTATGAAT GCTTCACTGC AGGTTCAGGG CAAAGAGAGC
TGGTGTCCTC GTCGTGACGA AGCCTATCTT GGTGTGTTAG TCGATGATCT ATCTACCTTG
GGTACCAAAG AACCTTACCG TATGTTCACC AGCCGCGCGG AGTATCGTCT GTTACTGCGT
GAAGACAATG CCGATCTGCG TCTGACCGAG AAGGGTCATC AAATTGGATT GGTCGATGAA
GATCGCTGGG CTAAATTTAA TAAGAAGCGA GAGTCTATCG AACTCGAACT TCAACGTTTA
AGAAGCCAGT GGGTTCATCC TAACTCGCCA TTGCTCGAGG TATTAAACCC TGAGCTGAAT
ACCCCAATCT CTCGTGAAGC ATCATTCGAA GATCTACTTC GCCGTCCGGA GATGGATTAT
CCGAAGTTGA TGAGCTTAGA GGGATTCGGT CCGGCACTCG AAGATCAGCG TGCTGCAGAG
CAAGTGCAGA TACAAGTTAA ATATTCGGGT TATATCCAAC GCCAGCAAGA TGAGATCGAT
AAAGCGATAA AACATGAAAC GACAGGTTTG CCGTTAGAGC TTGATTATCA GGAAGTTCCG
GGTCTTTCAA ATGAAGTTAT CGCTAAGCTT AACGATCATA AGCCTGAAAC TATAGGTCAG
GCCTCGAGAA TTTCGGGAAT GACGCCTGCT GCGATCTCTA TTTTACTGGT CCATCTGAAG
CGACGCGGTC TATTACGTAA AAACCCTTCT AAAAGCTAA
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| Protein sequence | MHFHERFDVI VIGGGHAGTE AALAAARMGS KTLLLTHNID TLGQMSCNPA IGGIGKGHLV
KEIDALGGAM AIATDYAGIQ FRTLNSSKGP AVRATRAQAD RALYRAKIQE ILQNQPNLRL
FQQAVDDLIV ENGKVTGVVT QMGLAFEAPA VVLTAGTFLS GKIHIGMQNY SGGRAGDPPS
IALADRLREL PIRIGRLKTG TPPRIDANTI NFDLMTEQKG DTPLPVMSFI GDVSHHPRQV
SCFVTHTNER THDIIRGGLD RSPMYSGIIE GVGPRYCPSI EDKINRFADK SSHQIFIEPE
GLNTNEIYPN GISTSLPFDV QLNLVRSIKG MENAEIIRPG YAIEYDYFDP RDLKNSLETK
SIQGLFFAGQ INGTTGYEEA GAQGLLAGMN ASLQVQGKES WCPRRDEAYL GVLVDDLSTL
GTKEPYRMFT SRAEYRLLLR EDNADLRLTE KGHQIGLVDE DRWAKFNKKR ESIELELQRL
RSQWVHPNSP LLEVLNPELN TPISREASFE DLLRRPEMDY PKLMSLEGFG PALEDQRAAE
QVQIQVKYSG YIQRQQDEID KAIKHETTGL PLELDYQEVP GLSNEVIAKL NDHKPETIGQ
ASRISGMTPA AISILLVHLK RRGLLRKNPS KS
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