| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4496 |
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| Symbol | gidB |
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| ID | 5612515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5498819 |
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| End bp | 5499439 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935473 |
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| Product | 16S rRNA methyltransferase GidB |
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| Protein accession | YP_001476226 |
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| Protein GI | 157377626 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0357] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division |
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| TIGRFAM ID | [TIGR00138] 16S rRNA methyltransferase GidB |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.227983 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000107328 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | GTGTTATCTG CCCAATTAGA TGAGTATCTG GCTGAAATGA ATCTGTCTGC GACCGAGCAG
CAGAAAAAAC AGCTTATTGG TTTTGTTGAG ATGCTCAACA AGTGGAATAA GGCCTACAAT
CTGACGTCGA TTCGAGATCC GCAGCAGATG CTGATCAGAC ATATCATGGA TAGCCTTGCC
GTTTCACCAC ATCTTGTGGG TGAACGTTTT ATCGATGTCG GAACGGGACC GGGTCTACCT
GGTATTCCTC TGGCCATTAT GAATCCTGAT AAAACCTTCG TCCTGTTAGA CAGCTTAGGT
AAGCGGATCC GCTTCCAAAA GCAGGTTCAG CATGAGTTAG GCATCAAGAA TATCAGTTCG
GTAGAGAGCC GGGTCGAGGC TTACCAGCCT GAGACAAAAT TTGATGGTGT CTTGAGTCGT
GCTTTTGCAT CGATTGAAGA TATGCTGCAT TGGTGTCATC ACCTTCCGAC TGACGATGGG
TGTTATTACG CCCTGAAAGG TCAGCTTGCA GAAGATGAAA TGGAAAAACT TCCTGAAGAA
TTTGAAGTTA CCGATGTGAT TGAGCTCAAG GTACCTCGCC TGGATGAGCA GCGACACCTA
TTGAGAGTTA TCAAAAAATA G
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| Protein sequence | MLSAQLDEYL AEMNLSATEQ QKKQLIGFVE MLNKWNKAYN LTSIRDPQQM LIRHIMDSLA
VSPHLVGERF IDVGTGPGLP GIPLAIMNPD KTFVLLDSLG KRIRFQKQVQ HELGIKNISS
VESRVEAYQP ETKFDGVLSR AFASIEDMLH WCHHLPTDDG CYYALKGQLA EDEMEKLPEE
FEVTDVIELK VPRLDEQRHL LRVIKK
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