| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4494 |
|---|
| Symbol | |
|---|
| ID | 5612513 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5497040 |
|---|
| End bp | 5497924 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640935471 |
|---|
| Product | ParB family protein |
|---|
| Protein accession | YP_001476224 |
|---|
| Protein GI | 157377624 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1475] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR00180] ParB-like partition proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00131449 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00000708734 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAGTAA AAAAACGCGG TTTGGGCAAA GGTTTAGATG CATTACTCAG CACTAGCCAC
GCGGCAAATA GTAAGCAAGC AGCAAGTGAA GTTGTTGATG AATCAGTTAA AAATGATGAT
TTATTGATAC TTGATGTTGA CCTTATGCAG CCTGGAAAGT ACCAACCTCG TAAAGATATG
TCTCCGGAGG CACTCGAAGA GCTTTCTGAG TCAATAAAAG TCCAGGGAAT TATCCAGCCA
ATTGTTGTTC GTAAGATATC TCCTGAGATG TTTGAGATCA TTGCCGGTGA ACGTCGTTGG
CGCGCCGCCC AGTTAGCTAA GCTTGATAAG GTTCCTTGTA TTGTAAAACA GGTGCCCGAC
GAATCGGCTG TAGCCATTGC GCTGATTGAG AATATTCAAC GTGAAGATCT CAATGCGATG
GAAGAAGCAA TAGCGCTTCA ACGATTAATG GAAGAGTTTA ATTTAACCCA TCAACAGATC
GCAGGGGCCG TGGGTAAGTC TCGCGCTACT GTCTCTAATC TACTGCGTCT GAATGGTCTT
AATGAGCCTG TAAAGCGTAT GCTGGAGTAT GGTGATATCG ATATGGGCCA TGCCCGAGCC
TTGCTTGCTA TTGAAGGTGA CGAACAGACA ACTATCGCAA GGTTAGTTGC CGCGAAAGAA
TTAACTGTTC GTGAAACTGA ACGATTAGTC ACTAAAACAC TAAATCCGCC TAAAACTGTA
GATAAACCTG CAAAAGATCA CGATGTTGCC CGCCTCGAAA GTCAATTAGT CGAACGTCTA
GGTGCGAAAG TTTCTATTAC CCACAATAAA AAGGGTAAAG GAAAATTGGT AATAAACTAT
CAAGATCTCG CTGAATTAGA CGGTATTATC GACAGAATCC GCTAA
|
|---|
| Protein sequence | MTVKKRGLGK GLDALLSTSH AANSKQAASE VVDESVKNDD LLILDVDLMQ PGKYQPRKDM
SPEALEELSE SIKVQGIIQP IVVRKISPEM FEIIAGERRW RAAQLAKLDK VPCIVKQVPD
ESAVAIALIE NIQREDLNAM EEAIALQRLM EEFNLTHQQI AGAVGKSRAT VSNLLRLNGL
NEPVKRMLEY GDIDMGHARA LLAIEGDEQT TIARLVAAKE LTVRETERLV TKTLNPPKTV
DKPAKDHDVA RLESQLVERL GAKVSITHNK KGKGKLVINY QDLAELDGII DRIR
|
|---|
| |