| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4489 |
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| Symbol | |
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| ID | 5612619 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5494247 |
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| End bp | 5494780 |
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| Gene Length | 534 bp |
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| Protein Length | 177 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640935466 |
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| Product | F0F1 ATP synthase subunit delta |
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| Protein accession | YP_001476219 |
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| Protein GI | 157377619 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0712] F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) |
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| TIGRFAM ID | [TIGR01145] ATP synthase, F1 delta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0316955 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000555813 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTGAAA TAACCACCAT CGCTCGTCCT TACGCAAAGG CAGCGTTTGA TTTTGCTATT
GAAAACAACG CAGTTGATAG TTGGGCAGAG ATGCTGAACT TCGCGGCTAT GGTAAGTGAA
AACGAAACCA TTAAGCCACT GCTTGCCGGC GGATTAGCCA GCAATAAGCT TGCCGAACTC
TTTATTGGAG TTTGTGGTGA GCAGGTCAAT GAGCAAGGTC AAAATCTGTT AAAGGTAATG
GCTGAAAACG GTCGTTTAGA AGTACTACCT GCTGTGGCTC AACAATTTGT TGAACTATGC
AATGAGTGGG CAAAAGAGAT TGAAGCTACT GTAGTTTCAG CTGTTGAGCT TACTTCAGAA
CAGCAACAGG ATATTAGTGT TTCTTTAGAG AAACGTCTCG CACGCAAAGT TAAGCTGAAT
TGCAGCATAG ATGCCAGCCT TGTAGCTGGT GTAATTATCA CGGCAGGAGA CCTGGTCATT
GATGGCTCGG TCCGCGGAAA AATTTCGCGT CTGTCTGATA CTCTGCAATC GTAA
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| Protein sequence | MAEITTIARP YAKAAFDFAI ENNAVDSWAE MLNFAAMVSE NETIKPLLAG GLASNKLAEL
FIGVCGEQVN EQGQNLLKVM AENGRLEVLP AVAQQFVELC NEWAKEIEAT VVSAVELTSE
QQQDISVSLE KRLARKVKLN CSIDASLVAG VIITAGDLVI DGSVRGKISR LSDTLQS
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